View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0518_low_7 (Length: 297)

Name: NF0518_low_7
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0518_low_7
NF0518_low_7
[»] chr8 (12 HSPs)
chr8 (58-224)||(13816705-13816871)
chr8 (59-224)||(35101063-35101228)
chr8 (58-220)||(5213455-5213617)
chr8 (59-224)||(26749200-26749365)
chr8 (71-224)||(1955601-1955754)
chr8 (71-224)||(15056215-15056368)
chr8 (71-224)||(38205538-38205691)
chr8 (71-223)||(30529944-30530096)
chr8 (67-200)||(17744262-17744395)
chr8 (58-140)||(5735767-5735849)
chr8 (174-224)||(1633962-1634012)
chr8 (62-100)||(27392271-27392309)
[»] chr7 (7 HSPs)
chr7 (58-224)||(22193882-22194048)
chr7 (71-224)||(36521097-36521250)
chr7 (76-224)||(22659515-22659663)
chr7 (71-224)||(32127561-32127714)
chr7 (71-223)||(26814734-26814886)
chr7 (71-164)||(40301220-40301313)
chr7 (67-174)||(1940162-1940268)
[»] chr6 (9 HSPs)
chr6 (58-224)||(634336-634502)
chr6 (58-224)||(6377731-6377897)
chr6 (58-224)||(17958599-17958765)
chr6 (71-224)||(34841077-34841230)
chr6 (58-202)||(29952327-29952472)
chr6 (71-211)||(8221785-8221925)
chr6 (71-212)||(18641867-18642008)
chr6 (71-224)||(24916931-24917084)
chr6 (71-224)||(24114716-24114869)
[»] chr4 (14 HSPs)
chr4 (58-224)||(2212584-2212750)
chr4 (58-224)||(46914778-46914944)
chr4 (58-224)||(53181732-53181898)
chr4 (58-224)||(36658102-36658268)
chr4 (71-224)||(3530577-3530730)
chr4 (71-224)||(3615566-3615719)
chr4 (71-224)||(8994354-8994507)
chr4 (71-224)||(13113132-13113285)
chr4 (71-224)||(16172169-16172322)
chr4 (58-224)||(34434838-34435004)
chr4 (71-224)||(28900589-28900742)
chr4 (76-224)||(33606653-33606801)
chr4 (71-224)||(28446845-28446998)
chr4 (163-219)||(36564834-36564890)
[»] chr3 (22 HSPs)
chr3 (58-224)||(17469082-17469248)
chr3 (58-224)||(25788009-25788175)
chr3 (58-224)||(25829966-25830132)
chr3 (58-224)||(42598664-42598830)
chr3 (58-224)||(47146939-47147105)
chr3 (58-224)||(33935843-33936009)
chr3 (71-224)||(6045650-6045803)
chr3 (71-224)||(30415778-30415931)
chr3 (71-224)||(42563578-42563731)
chr3 (71-224)||(10424974-10425127)
chr3 (71-224)||(43475059-43475212)
chr3 (102-224)||(51429540-51429662)
chr3 (104-224)||(50019664-50019784)
chr3 (71-224)||(26157417-26157570)
chr3 (76-224)||(33188391-33188539)
chr3 (67-224)||(30689139-30689296)
chr3 (71-224)||(4874420-4874573)
chr3 (58-200)||(21227806-21227948)
chr3 (112-224)||(4852727-4852839)
chr3 (58-98)||(51429654-51429694)
chr3 (135-200)||(21229898-21229963)
chr3 (58-90)||(50019786-50019818)
[»] chr2 (10 HSPs)
chr2 (58-224)||(9073221-9073387)
chr2 (58-224)||(12857545-12857711)
chr2 (58-224)||(30819918-30820084)
chr2 (58-224)||(8854665-8854831)
chr2 (71-224)||(7585851-7586004)
chr2 (67-224)||(5145682-5145839)
chr2 (58-224)||(31185544-31185710)
chr2 (67-224)||(31205267-31205425)
chr2 (58-212)||(4278747-4278901)
chr2 (102-184)||(2779425-2779507)
[»] chr1 (14 HSPs)
chr1 (58-224)||(31470854-31471020)
chr1 (58-224)||(45241706-45241872)
chr1 (58-224)||(17785911-17786077)
chr1 (71-224)||(2475441-2475594)
chr1 (71-224)||(48385497-48385650)
chr1 (71-224)||(47297866-47298019)
chr1 (78-231)||(8470892-8471044)
chr1 (71-224)||(17676628-17676781)
chr1 (79-224)||(18318078-18318223)
chr1 (71-224)||(38837005-38837158)
chr1 (71-224)||(33166855-33167008)
chr1 (58-224)||(51522908-51523074)
chr1 (71-195)||(48407013-48407137)
chr1 (173-224)||(10265804-10265855)
[»] chr5 (9 HSPs)
chr5 (58-219)||(31012330-31012491)
chr5 (71-224)||(32973672-32973825)
chr5 (71-224)||(27945222-27945375)
chr5 (71-224)||(40891392-40891545)
chr5 (58-224)||(4579675-4579829)
chr5 (71-224)||(30646179-30646332)
chr5 (78-224)||(29616846-29616992)
chr5 (173-224)||(34710669-34710720)
chr5 (58-105)||(21365263-21365310)
[»] scaffold1240 (1 HSPs)
scaffold1240 (58-224)||(17-183)
[»] scaffold0021 (1 HSPs)
scaffold0021 (71-224)||(110521-110674)
[»] scaffold0004 (1 HSPs)
scaffold0004 (71-224)||(105444-105597)
[»] scaffold0007 (1 HSPs)
scaffold0007 (102-224)||(166670-166792)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 13816871 - 13816705
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13816871 cagagaggagaaacatatttgggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 13816772  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13816771 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 13816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 35101228 - 35101063
Alignment:
Q  59 agagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaa 158  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  35101228 agagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgttttaa 35101129  T
Q  159 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35101128 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 35101063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 5213617 - 5213455
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  5213617 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 5213518  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaag 220  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  5213517 attatacgagcaaaataataaataaatggattggggcttatgaaagcgctaagcgtatgcaag 5213455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 26749200 - 26749365
Alignment:
Q  59 agagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaa 158  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26749200 agagaggagaaacatattggtgtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaa 26749299  T
Q  159 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  26749300 ttatatgagcaaagtaataaataaatggattggtgcttatgaaagcgctaaacgtttgcaaggaag 26749365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 1955601 - 1955754
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  1955601 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 1955700  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  1955701 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 1955754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 15056368 - 15056215
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  15056368 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 15056269  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  15056268 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 15056215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 38205538 - 38205691
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  38205538 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 38205637  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||||  ||||||||  ||||||||||    
T  38205638 agtaataaataaatggattggtgcttatgaaaaagctaagcgtttgcaaggaag 38205691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 30529944 - 30530096
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  30529944 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 30530043  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaa 223  Q
    | |||||||| ||||||||||||||||||||| ||| |||||  |||||||||    
T  30530044 agtaataaatgaatggattggtgcttatgaaaacgccaagcgtttgcaaggaa 30530096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 17744395 - 17744262
Alignment:
Q  67 gaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatga 166  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| |  ||||||||||||||||  ||| |||||||||||||||    
T  17744395 gaaacatattagggtaaaattgctgagtattgtaatgagtatggctcatttgattctccactggatctagttgcatgccagaactgttttaattatatga 17744296  T
Q  167 gcaaaataataaataaatggattggtgcttatga 200  Q
    ||||| |||||||||||||| |||||||||||||    
T  17744295 gcaaagtaataaataaatgggttggtgcttatga 17744262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 5735849 - 5735767
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgc 140  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  5735849 cagaggggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcatttgattctccccgcgatcaagttgc 5735767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 1633962 - 1634012
Alignment:
Q  174 aataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  1633962 aataaataaatggattggtgcttatgaaagcgctaagtgtttgcaaggaag 1634012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 27392309 - 27392271
Alignment:
Q  62 gaggagaaacatactggggtaaaattgctgagtattgta 100  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  27392309 gaggtgaaacatattggggtaaaattgctgagtattgta 27392271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 22194048 - 22193882
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  22194048 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 22193949  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22193948 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 22193882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 36521250 - 36521097
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  36521250 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 36521151  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  36521150 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 36521097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 22659663 - 22659515
Alignment:
Q  76 tggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataa 175  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||    
T  22659663 tggggtaaaattgttgagtattttaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaaattaa 22659564  T
Q  176 taaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||| |||||||||||||  ||| |||||| |||||||||||    
T  22659563 taaataaatgggttggtgcttatgatggcgttaagcgtatgcaaggaag 22659515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 32127561 - 32127714
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  32127561 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 32127660  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||||| | ||||||  ||||||||||    
T  32127661 agtaataaataaatggattggtgcttatgaaagtgttaagcgtttgcaaggaag 32127714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 26814886 - 26814734
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||| ||||||| |||||| |||||||||||||  |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  26814886 catattggggtaaaattgctaagtattgcaatgagcattgctcattcgaccctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26814787  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaa 223  Q
    | |||||||||||||||||| |||||||||||| ||||||||  |||||||||    
T  26814786 agtaataaataaatggattgatgcttatgaaagtgctaagcgtttgcaaggaa 26814734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 40301220 - 40301313
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatat 164  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||    
T  40301220 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgtgcgatgtagttgcatgccgaaaccattttaattatat 40301313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 1940162 - 1940268
Alignment:
Q  67 gaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatga 166  Q
    |||||||| || |||| ||||| ||||| | |||||||| |||  ||||||||| |||| | ||||  ||||| ||| |||||||||||||||||||||     
T  1940162 gaaacatattgaggtagaattgttgagtgt-gtaatgagcatttatcattcgatcctccgcgcgatgaagttgaatgtcgaaaccgttttaattatatgt 1940260  T
Q  167 gcaaaata 174  Q
     |||||||    
T  1940261 acaaaata 1940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 634502 - 634336
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  634502 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 634403  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  634402 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 634336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 6377731 - 6377897
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  6377731 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 6377830  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6377831 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 6377897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 17958599 - 17958765
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  17958599 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17958698  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17958699 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 17958765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 34841230 - 34841077
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  34841230 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 34841131  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  34841130 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 34841077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 29952327 - 29952472
Alignment:
Q  58 cagagaggagaaacatact-ggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttt 156  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||  ||| ||||| ||||||||||| ||||||||||||||||    
T  29952327 cagagaggagaaacatattaggggtaaatttgctgagtattgtaatgaatattgctcatttaattatccccgcgatctagttgtatgccgaaaccgtttt 29952426  T
Q  157 aattatatgagcaaaataataaataaatggattggtgcttatgaaa 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  29952427 aattatatgagcaaagtaataaataaatggattggtgcttatgaaa 29952472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 8221925 - 8221785
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||    
T  8221925 catattggggtaaaattgctgagtattgtaatgagaattgctcattcgattctccgcgcgatgtagttgcatgccgcaaccgttttaattatatgagcaa 8221826  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagc 211  Q
    | |||||||||||||| |||||||||||||  |||||||||    
T  8221825 attaataaataaatgggttggtgcttatgatggcgctaagc 8221785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 18642008 - 18641867
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |  ||| || |||| |||||||||| ||||||||||||||||||    
T  18642008 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccattttaattatatgagcaa 18641909  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcg 212  Q
    | |||||||||||||||||||||||||||||| |||||||||    
T  18641908 agtaataaataaatggattggtgcttatgaaatcgctaagcg 18641867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 24916931 - 24917084
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |  ||| || |||| |||||||||| ||||||||||||||||||    
T  24916931 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccattttaattatatgagcaa 24917030  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  24917031 agtaataaataaatggattggtgcttatgaaagcgctaaacgtttgcaaggaag 24917084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 24114869 - 24114716
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| | | |||| || ||||||||| ||||||||||||||||||||||||    
T  24114869 catattggggtaaaattgctgagtattgtaatgagcattactcattcgattctgcgctcgatgtaattgcatgccaaaaccgttttaattatatgagcaa 24114770  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||   |||||||||||||| ||||||||| | ||||| ||  ||||||||||    
T  24114769 aataccgaataaatggattggcgcttatgaaggtgctaaacgtttgcaaggaag 24114716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 2212584 - 2212750
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2212584 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 2212683  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2212684 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 2212750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 46914778 - 46914944
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  46914778 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaactgtttta 46914877  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46914878 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 46914944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 53181732 - 53181898
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  53181732 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 53181831  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  53181832 attatatgagcaaaataataaataaatggattggtgcttatgaaagtgctaagcgtatgcaaggaag 53181898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 36658268 - 36658102
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||| ||||||||||||    
T  36658268 cagagaggaaaaacatattggggtaaaattgctgagtattgtaatgagtgttgctcatttgattctccccgggatctagttgcatgcagaaaccgtttta 36658169  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  36658168 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcgttaagcgtttgcaaggaag 36658102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 3530577 - 3530730
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  3530577 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3530676  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  3530677 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 3530730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 3615566 - 3615719
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  3615566 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3615665  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  3615666 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 3615719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 8994507 - 8994354
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  8994507 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 8994408  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  8994407 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 8994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 13113285 - 13113132
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  13113285 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 13113186  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  13113185 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 13113132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 16172169 - 16172322
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||| | |||| ||||||||||    
T  16172169 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccggtataataatatgagcaa 16172268  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| |||||||||||||  |||||||||| |||||||||||    
T  16172269 attaataaataaatgggttggtgcttatgatggcgctaagcgtatgcaaggaag 16172322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 34434838 - 34435004
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    |||| ||| ||| |||| |||||||||||||||||||||||||||||| |||||  ||||||| |||| |  ||| || |||||||||||||||||||||    
T  34434838 cagacaggtgaagcatattggggtaaaattgctgagtattgtaatgagcattgcaaattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 34434937  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||||||   ||||||||||    
T  34434938 attatatgagcaaagtaataaataaatggattgatgtttatgaaagcgctaagcatttgcaaggaag 34435004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 28900742 - 28900589
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    ||| |||||||||||||||||| ||||||||||||||||||    
T  28900742 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgattctccgtgtgatgtagttgcatgccgaaaccattttaattatatgagcaa 28900643  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||   |||||||||||||  ||||||||||  ||||||||||    
T  28900642 attaataaataaatttgttggtgcttatgatggcgctaagcgtttgcaaggaag 28900589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 33606801 - 33606653
Alignment:
Q  76 tggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataa 175  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||| |||| |  ||| || |||| |||||||| | ||||||||||||||||||| |||    
T  33606801 tggggtaaaattgttgagtattgtaatgaacattactcattcgatcctccgcgtgatgtaattgcttgccgaaatcattttaattatatgagcaaagtaa 33606702  T
Q  176 taaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  33606701 taaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaag 33606653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 28446998 - 28446845
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||| |||||||||||||||| |||||||||||||| |||| |  | | || |||||||| |||||||||||||||||||||||||    
T  28446998 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgatcctccacgtggtgtaattgcatgcagaaaccgttttaattatatgagcaa 28446899  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||| |  ||||||||||||  ||||||||| |||||||| |  ||||||||||    
T  28446898 aatactgtataaatggattgacgcttatgaaggcgctaagagtttgcaaggaag 28446845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 36564834 - 36564890
Alignment:
Q  163 atgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaa 219  Q
    |||| ||||||| | |||||||||||||| |||||||| |||||||| || ||||||    
T  36564834 atgaacaaaatacttaataaatggattggcgcttatgatagcgctaaacgtatgcaa 36564890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 17469248 - 17469082
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  17469248 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17469149  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17469148 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 17469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 25788009 - 25788175
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  25788009 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25788108  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25788109 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 25788175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 25829966 - 25830132
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  25829966 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25830065  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25830066 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 25830132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 42598664 - 42598830
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  42598664 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgctgaaaccgtttta 42598763  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42598764 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 42598830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 47147105 - 47146939
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  47147105 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtatagctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 47147006  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47147005 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 47146939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 33936009 - 33935843
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33936009 cagagaggagaaacatattagggtaaaattgttgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 33935910  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  33935909 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaag 33935843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 6045650 - 6045803
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  6045650 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 6045749  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  6045750 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 6045803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 30415778 - 30415931
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  30415778 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 30415877  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  30415878 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 30415931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 42563731 - 42563578
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  42563731 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 42563632  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  42563631 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 42563578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 10424974 - 10425127
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  10424974 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 10425073  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||  |||||||||||    
T  10425074 attaataaataaatgggttggtgcttatgatagcgctaagcatatgcaaggaag 10425127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 43475212 - 43475059
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  43475212 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaa 43475113  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| |||||||||||||  || |||||||  ||||||||||    
T  43475112 attaataaataaatgggttggtgcttatgatggcactaagcgtttgcaaggaag 43475059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 51429662 - 51429540
Alignment:
Q  102 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 201  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51429662 tgagtattgctcattcgattctccacgcgatctagttgcctgccgaaaccgttttaattatatgaacaaaataataaataaatggattggtgcttatgaa 51429563  T
Q  202 agcgctaagcgaatgcaaggaag 224  Q
    ||||||||||| |||||||||||    
T  51429562 agcgctaagcgtatgcaaggaag 51429540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 50019784 - 50019664
Alignment:
Q  104 agtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaag 203  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  50019784 agtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgaacaaagtaataaataaatggattggtgcttatgaaag 50019685  T
Q  204 cgctaagcgaatgcaaggaag 224  Q
    |||||||||  ||||||||||    
T  50019684 cgctaagcgtttgcaaggaag 50019664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 26157417 - 26157570
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  26157417 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26157516  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  26157517 agtaataaataaatggattggtgcttatgaaagtgctaagcgtctgcaaggaag 26157570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 33188391 - 33188539
Alignment:
Q  76 tggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataa 175  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||| |||    
T  33188391 tggggtaaaattgctgagtattgtaatgaacattgctaattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaaattaa 33188490  T
Q  176 taaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||| |||||||||||||  ||||||||||  ||||||||||    
T  33188491 taaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaag 33188539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 30689139 - 30689296
Alignment:
Q  67 gaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatga 166  Q
    |||| ||| |||||| |||||||||||||||||||||||||| ||||||| |||||||| |  |||||||||||||||||||| | |||||||||||| |    
T  30689139 gaaatatattggggtgaaattgctgagtattgtaatgagtatggctcatttgattctccgcgggatctagttgcatgccgaaatcattttaattatataa 30689238  T
Q  167 gcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||  ||||||||||    
T  30689239 gcaaagtaataaataaatggattggtgcttatgatgccgctaagcgtttgcaaggaag 30689296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 4874420 - 4874573
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||| |||||||| |||||||||||||||| || |||||||||||||||| | |||   ||||||||||||||||||||||||||||||||||||    
T  4874420 catattgggttaaaattgttgagtattgtaatgagcatcgctcattcgattctccgcgcgactcagttgcatgccgaaaccgttttaattatatgagcaa 4874519  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| |||||||||||||  | ||||||||  ||||||||||    
T  4874520 attaataaataaatgggttggtgcttatgatggtgctaagcgtttgcaaggaag 4874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 21227948 - 21227806
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    |||| ||| |||||||| ||||||| ||||| ||| |||||||||||| |||||||||| ||| |||| ||||||  ||||||||| |||||||||| ||    
T  21227948 cagaaaggtgaaacatattggggtagaattgttgattattgtaatgagaattgctcatttgatcctccgcacgatggagttgcatgtcgaaaccgttata 21227849  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatga 200  Q
    ||||||||| ||||||| ||  |||||||||||| ||||||||    
T  21227848 attatatgaacaaaatactaggtaaatggattggcgcttatga 21227806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 4852727 - 4852839
Alignment:
Q  112 tcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagc 211  Q
    |||||||||||||| | |||   || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  | |||||||    
T  4852727 tcattcgattctccgcgcgactcaggtgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgatggtgctaagc 4852826  T
Q  212 gaatgcaaggaag 224  Q
    |  ||||||||||    
T  4852827 gtttgcaaggaag 4852839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 51429694 - 51429654
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattg 98  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  51429694 cagagaggagaaacatattggggtaaaattgctgagtattg 51429654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 21229898 - 21229963
Alignment:
Q  135 agttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatga 200  Q
    ||||||||| |||||| ||| ||||||||||| ||||||| |   |||||||||||| ||||||||    
T  21229898 agttgcatgtcgaaactgttataattatatgaacaaaatactgggtaaatggattggcgcttatga 21229963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 50019818 - 50019786
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgct 90  Q
    ||||||||||||||||| |||||||||||||||    
T  50019818 cagagaggagaaacatattggggtaaaattgct 50019786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 9073221 - 9073387
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  9073221 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 9073320  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9073321 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 9073387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 12857711 - 12857545
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  12857711 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 12857612  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12857611 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 12857545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 30819918 - 30820084
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  30819918 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 30820017  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30820018 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 30820084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 8854831 - 8854665
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  8854831 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 8854732  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8854731 attatatgagtaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 8854665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 7585851 - 7586004
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  7585851 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 7585950  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  7585951 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 7586004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 5145682 - 5145839
Alignment:
Q  67 gaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatga 166  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| |  ||| || |||| |||||||||||||||||||||||||    
T  5145682 gaaacatattggggtaaaattgctgagtattgtaatgagcattgctcatttgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatga 5145781  T
Q  167 gcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5145782 gcaaagtaataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaag 5145839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 31185544 - 31185710
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||| || |||||||| ||||||||||||| ||||||||||| ||||||| ||||||| |||||||| |  |||||||||||||||| |||||||||||    
T  31185544 cagaggggtgaaacatattggggtaaaattgatgagtattgtattgagtatggctcatttgattctccgcgggatctagttgcatgccaaaaccgtttta 31185643  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| ||||||||||||||||| ||||||||||   |||||||||  ||||||||||    
T  31185644 attatatgagcaaagtaataaataaatggattagtgcttatgatgccgctaagcgtttgcaaggaag 31185710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 31205267 - 31205425
Alignment:
Q  67 gaaacatactggggtaaaattgctgagtattg-taatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatg 165  Q
    |||||||| ||||||||||||| ||||||||| |||||||||  ||||||| |||||||| |  ||||||||||||||||||||| ||||||||||||||    
T  31205267 gaaacatattggggtaaaattgatgagtattggtaatgagtacggctcatttgattctccgcgggatctagttgcatgccgaaactgttttaattatatg 31205366  T
Q  166 agcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||| ||||||||||||||||| ||||||||||   |||||||||  ||||||||||    
T  31205367 agcaaagtaataaataaatggattagtgcttatgatgccgctaagcgtttgcaaggaag 31205425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 4278901 - 4278747
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    |||| ||| ||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| || | |  ||| || |||||||||||||||||||||    
T  4278901 cagacaggtgaagcatattggggtaaaattgttgagtattgtaatgagcattgctcattcgatccttcgcgtgatgtaattgcatgccgaaaccgtttta 4278802  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcg 212  Q
    |||||||||||||| || |||||||||||||||| ||||||||  ||||||||||    
T  4278801 attatatgagcaaagtactaaataaatggattggcgcttatgatggcgctaagcg 4278747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 2779425 - 2779507
Alignment:
Q  102 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaat 184  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2779425 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaagtaataaataaat 2779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 31471020 - 31470854
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31471020 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31470921  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31470920 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 31470854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 45241872 - 45241706
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  45241872 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 45241773  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45241772 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 45241706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 17786077 - 17785911
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||    
T  17786077 cagagaggagaaacaaattggggtaaaattgctgagtattgtaatgagtattgctcattcgattatccccgcgatctagttgcatgccgaaatcgtttta 17785978  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||||    
T  17785977 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcactaagcgtttgcaaggaag 17785911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 2475441 - 2475594
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  2475441 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 2475540  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  2475541 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 2475594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 48385497 - 48385650
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  48385497 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 48385596  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  48385597 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 48385650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 47297866 - 47298019
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||    
T  47297866 catattggggtaaagttgctgagtattgtaatgagcattgctcattcgattctccacgcgatgtagttgcatgccgaaactgttttaattatatgagcaa 47297965  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||  ||||||||||  ||||||||||    
T  47297966 attaataaataaatggattggtgcttatgatggcgctaagcgtttgcaaggaag 47298019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 8471044 - 8470892
Alignment:
Q  78 gggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataata 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||| |||||    
T  8471044 gggtataattgctgagtattgtaatgagtattgctcattcgattctccgcgcgaagtagttgcatgccgaaaccgttttaattatatgagcaaattaata 8470945  T
Q  178 aataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaagatgatgt 231  Q
    ||||||||| || ||||||| ||  ||||||||||  |||||||||||||||||    
T  8470944 aataaatgggtt-gtgcttaagatggcgctaagcgtttgcaaggaagatgatgt 8470892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 17676628 - 17676781
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||    
T  17676628 catattggggtaaaattgctgagtattataatgagcattgctcattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaa 17676727  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| |||||||||||||  || |||||||  ||||||||||    
T  17676728 attaataaataaatgggttggtgcttatgatggcactaagcgtttgcaaggaag 17676781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 18318078 - 18318223
Alignment:
Q  79 ggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataa 178  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| | |||| || |||||||||||||| ||||||||||||||||||||||| |||    
T  18318078 ggtaaaattgttaagtattgtaatgagcattgctcattcgattctccgcgcgatgtaattgcatgccgaaactgttttaattatatgagcaaaatactaa 18318177  T
Q  179 ataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||  ||||||||| ||||||||||  ||||||||||    
T  18318178 ataaatggattgacgcttatgaaggcgctaagcgtttgcaaggaag 18318223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 38837005 - 38837158
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||| | ||||  || |||||||| ||||||||||||||||||||||||    
T  38837005 catattggtgtaaaattgctgagtattgtaatgagcattgctcattcaattctccgcgcgatgcagctgcatgccaaaaccgttttaattatatgagcaa 38837104  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| |||||||||||||  ||||||||||  ||||||||||    
T  38837105 attaataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaag 38837158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 33167008 - 33166855
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |  ||| || |||| |||||||||||||||| ||||||| ||||    
T  33167008 catattggggtaaaattgctgagtattgtaatgagtattgctcattcgatcctctgcgtgatgtaattgcttgccgaaaccgttttagttatatgtgcaa 33166909  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||| ||||||| ||||||||||| |||||||||  ||||||||||    
T  33166908 agtaataaataattggattgatgcttatgaaatcgctaagcgtttgcaaggaag 33166855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 51523074 - 51522908
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    |||| ||| ||| |||| ||||||||||||| |||||||||||||||  |||||| ||||||| |||| |  ||| || |||||||||||||||||||||    
T  51523074 cagacaggtgaagcatattggggtaaaattgatgagtattgtaatgatcattgcttattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 51522975  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
     |||||||||||||||| |||||||||||||||| | ||||||| ||||||||||  ||||||||||    
T  51522974 tttatatgagcaaaatactaaataaatggattggcgtttatgaaggcgctaagcgtttgcaaggaag 51522908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 48407137 - 48407013
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||| |||    
T  48407137 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcaatgtagttgcatgccgaaaccgttttaattatatgaacaa 48407038  T
Q  171 aataataaataaatggattggtgct 195  Q
    | |||||||||||||| ||||||||    
T  48407037 attaataaataaatgggttggtgct 48407013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10265804 - 10265855
Alignment:
Q  173 taataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| |||||||||||||  ||||||||||  ||||||||||    
T  10265804 taataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaag 10265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 31012330 - 31012491
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31012330 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31012429  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31012430 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaa 31012491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 32973672 - 32973825
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  32973672 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatatagttgcatgccgaaaccgttttaattatatgaacaa 32973771  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  32973772 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 32973825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 27945375 - 27945222
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  27945375 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 27945276  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  27945275 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 27945222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 40891545 - 40891392
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||    
T  40891545 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 40891446  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  40891445 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 40891392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 4579829 - 4579675
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| ||||||||||||||||||||||||            |||||||||||||||| |||||||||||  ||||||||||||||||    
T  4579829 cagagaggagaaacatattggggtaaaattgctgagtattgt------------tcattcgattctccccgcgatctagttgtctgccgaaaccgtttta 4579742  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4579741 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaag 4579675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 30646179 - 30646332
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||    
T  30646179 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgctcgatgtagttgcatgccgaaactgttttaattatatgagcaa 30646278  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |  ||||||||||||| |||||||||||||  ||||||||||  ||||||||||    
T  30646279 atgaataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaag 30646332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 29616846 - 29616992
Alignment:
Q  78 gggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataata 177  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||||||   |||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  29616846 gggtaaaattcctgagtattgtaacgagcattgatcattcgattctccgtgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaata 29616945  T
Q  178 aataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  29616946 aataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaag 29616992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 34710720 - 34710669
Alignment:
Q  173 taataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  34710720 taataaataaatggattggtgcttatgaaagtgctaagcgtttgcaaggaag 34710669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 21365310 - 21365263
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgag 105  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  21365310 cagataggtgaaacatattggggtaaaattgctgagtattgtaatgag 21365263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 17 - 183
Alignment:
Q  58 cagagaggagaaacatactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 157  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  17 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctctccgcgatctagttgcatgccgaaaccgtttta 116  T
Q  158 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||||    
T  117 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcactaagcgtttgcaaggaag 183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 110521 - 110674
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  110521 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 110620  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | |||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  110621 agtaataaataaatggattggtgcttatgaaagcgctaagcttttgcaaggaag 110674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 105597 - 105444
Alignment:
Q  71 catactggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaa 170  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||    
T  105597 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 105498  T
Q  171 aataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaag 224  Q
    | ||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  105497 agtaataaataaatggattggtgcttatgaaagtgctaagcgtttgcaaggaag 105444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 166670 - 166792
Alignment:
Q  102 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 201  Q
    ||||||||| ||||| ||| |||| | ||||  |||||||||||||||||||| ||||||||||| |  ||||||   |||||||||||| ||||||||     
T  166670 tgagtattgttcatttgatcctccgcgcgatggagttgcatgccgaaaccgttataattatatgaactgaataatgggtaaatggattggcgcttatgat 166769  T
Q  202 agcgctaagcgaatgcaaggaag 224  Q
    |||||||||||  ||||||||||    
T  166770 agcgctaagcgtttgcaaggaag 166792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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