View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0518_low_9 (Length: 296)
Name: NF0518_low_9
Description: NF0518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0518_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 31867828 - 31867588
Alignment:
| Q |
4 |
atgtcgaagaaaattgaaaactcgggaaaaa--cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaacc |
101 |
Q |
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| T |
31867828 |
atgtcgatgaaaattgaaaactcgggaaaaaaacttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaacc |
31867729 |
T |
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| Q |
102 |
aaatctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaacaaaatactaatgct |
201 |
Q |
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| T |
31867728 |
aaatctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatataaataaaaatatcaatcatcaaacaaaatactaatgct |
31867629 |
T |
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| Q |
202 |
tgtacatttggctcgataacatgatacccattaagattatc |
242 |
Q |
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| T |
31867628 |
tgtacatttggctcgataacatgatacccattaacattatc |
31867588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 31858982 - 31858745
Alignment:
| Q |
7 |
tcgaagaaaattgaaaactcgggaaaaa-cttcccaaaacctgaatgctatcatgaggaaactccactaagttcaattgtacttgtaacaaaaaccaaat |
105 |
Q |
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| T |
31858982 |
tcgatgaaaattggaaactcgggaaaaaacttcccaagccttgaatgctatcatgaggaaactccactaagttcaattgtacttacaac-aaaagcaaat |
31858884 |
T |
|
| Q |
106 |
ctatcatatagattcttaaaactttatgatatgcagtcatttaatgttttacaaatat---aaataaaaatatcaatcatcaaacaaaatactaatgctt |
202 |
Q |
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| T |
31858883 |
ctatcatatggattctgaaaa-tttatgatatgcagtcatttaatgtttaacgaatataaaaaataaaaataccaatcatcaaataaaatactaatgctt |
31858785 |
T |
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| Q |
203 |
gtacatttggctcgataacatgatacccattaagattatc |
242 |
Q |
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| T |
31858784 |
gcacattgggcttgataacatgatacctgttaacattatc |
31858745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 31867573 - 31867513
Alignment:
| Q |
233 |
taagattatcctaaactaatggtggttcgagctacatgaagcaaacatgtgttgtagattt |
293 |
Q |
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| T |
31867573 |
taagattatcctaaattaatggtggttcgagctacatgaagcaaacatgtgttgtaaattt |
31867513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 31858730 - 31858667
Alignment:
| Q |
233 |
taagattatcctaaactaatggtggttcgagctacatgaagcaaacatgtgttgtagatttctt |
296 |
Q |
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||||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
31858730 |
taagattatcccaaaataatgaaggttcgagctacaggaaggaaacatgtgttgtagatctctt |
31858667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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