View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0519_high_16 (Length: 270)

Name: NF0519_high_16
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0519_high_16
NF0519_high_16
[»] chr5 (2 HSPs)
chr5 (79-162)||(6360169-6360252)
chr5 (223-262)||(26002867-26002906)
[»] chr3 (4 HSPs)
chr3 (79-162)||(2004428-2004511)
chr3 (212-270)||(41708592-41708650)
chr3 (212-270)||(2004323-2004381)
chr3 (223-270)||(36653131-36653178)
[»] chr4 (2 HSPs)
chr4 (79-162)||(6739495-6739578)
chr4 (212-270)||(6739386-6739444)
[»] chr6 (2 HSPs)
chr6 (27-107)||(13821946-13822026)
chr6 (215-270)||(26331578-26331633)
[»] chr7 (2 HSPs)
chr7 (212-270)||(44266566-44266624)
chr7 (223-270)||(5372484-5372531)
[»] chr2 (1 HSPs)
chr2 (212-270)||(35786157-35786215)
[»] chr1 (4 HSPs)
chr1 (212-270)||(48743739-48743797)
chr1 (213-267)||(49835074-49835128)
chr1 (223-270)||(43276555-43276602)
chr1 (241-270)||(19492617-19492646)
[»] scaffold0361 (1 HSPs)
scaffold0361 (223-270)||(10185-10232)
[»] chr8 (1 HSPs)
chr8 (223-270)||(9949001-9949048)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 6360169 - 6360252
Alignment:
Q  79 atgtttaagaaattgatgtgttgttatttgtatgaagtttctaaaagatgctcaagtaatatgagaatgatgattgataaaaag 162  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  6360169 atgtttaagaaattgatgtgttgttatttttatgaagtttctaaatgatgctcaattaatatgagaatgatgattaataaaaag 6360252  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 26002906 - 26002867
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgct 262  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  26002906 gggatcttacgatccttgttacgatcgtacgatctacgct 26002867  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 2004511 - 2004428
Alignment:
Q  79 atgtttaagaaattgatgtgttgttatttgtatgaagtttctaaaagatgctcaagtaatatgagaatgatgattgataaaaag 162  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  2004511 atgtttaagaaattgatgtgttgttatttttatgaagtttctaaatgaggctcaagtaatatgagaatgatgattaataaaaag 2004428  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 41708650 - 41708592
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41708650 gtctattaggtgggatcttatgatccttgttacgatcctacgatctacgctctttctat 41708592  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 2004381 - 2004323
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  2004381 gtctattaggtgggatcttacgatccttgttacgatcttacgatttacgctctttctat 2004323  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 36653131 - 36653178
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  36653131 gggatcttacgatccttgttacgatcctacgatctacgctttttctat 36653178  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 6739578 - 6739495
Alignment:
Q  79 atgtttaagaaattgatgtgttgttatttgtatgaagtttctaaaagatgctcaagtaatatgagaatgatgattgataaaaag 162  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  6739578 atgtttaagaaattgttgtgttgttatttttatgaagtttctaaatgatgctcaagtaatatgagaatgatgattaatgaaaag 6739495  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 6739444 - 6739386
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  6739444 gtctattaggtgggagcttacgatccttgttacgatcctatgatctacgctctttctat 6739386  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 13822026 - 13821946
Alignment:
Q  27 atgttgggcttgatcaaaatgtcttgaatgacttgttgaactagnnnnnnnnatgtttaagaaattgatgtgttgttattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  13822026 atgttgggcttgatcaaaatgtcttgaatgacttgttgaactagttttttttatgtttaagaaattgatgtgttgttattt 13821946  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 26331633 - 26331578
Alignment:
Q  215 tattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    ||||||| | ||||||| |||||||||||||||||||  || ||||||||||||||    
T  26331633 tattaggtgagatcttacgatccttgttacgatcctataatttacgctctttctat 26331578  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 44266624 - 44266566
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44266624 gtctattaggtgggatcttacgatccttgttacgatcctacgatctacgctctttctat 44266566  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 5372484 - 5372531
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  5372484 gggatcttatgatccttgttaccatcttacgatctacgctttttctat 5372531  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 35786157 - 35786215
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  35786157 gtctattaggtgggatcttacgatccttgttacgatcctacgatctacactctttctat 35786215  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 48743797 - 48743739
Alignment:
Q  212 gtctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  48743797 gtctattaggtgggatcttacgatccttgttaccatcctacgatctacactctttctat 48743739  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 49835074 - 49835128
Alignment:
Q  213 tctattaggcgggatcttatgatccttgttacgatcctacgatctacgctctttc 267  Q
    |||||| || ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  49835074 tctatttggtgggatcttacgatctttgttacgatcctacgatctacgctttttc 49835128  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 43276555 - 43276602
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    ||||||||| ||||| ||||||||||||| ||| ||||||||||||||    
T  43276555 gggatcttacgatccgtgttacgatcctatgatttacgctctttctat 43276602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 19492646 - 19492617
Alignment:
Q  241 ttacgatcctacgatctacgctctttctat 270  Q
    ||||||||||||||||||||||||||||||    
T  19492646 ttacgatcctacgatctacgctctttctat 19492617  T

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Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 10232 - 10185
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||    
T  10232 gggatcttatgatccctgttacgatcctacgatctaccctttttctat 10185  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 9949001 - 9949048
Alignment:
Q  223 gggatcttatgatccttgttacgatcctacgatctacgctctttctat 270  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  9949001 gggatcttacgatccctgttacgatcctacgatctacgctttttctat 9949048  T

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