View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_high_22 (Length: 216)
Name: NF0519_high_22
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_high_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4650188 - 4649973
Alignment:
| Q |
1 |
acagtggagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctct |
100 |
Q |
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| T |
4650188 |
acagtggagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctct |
4650089 |
T |
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| Q |
101 |
atgcttaaagaataattagctagctatttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctag |
200 |
Q |
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| T |
4650088 |
atgcttaaagaataattagctagctaattgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctag |
4649989 |
T |
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| Q |
201 |
ctaacttttatgttct |
216 |
Q |
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|||||||||||||||| |
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| T |
4649988 |
ctaacttttatgttct |
4649973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 23682070 - 23682260
Alignment:
| Q |
3 |
agtggagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctt---tactacattgcttgattaatctctc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23682070 |
agtggagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaaactccctgatcctctttactactacattgcttgattaatctctc |
23682169 |
T |
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| Q |
100 |
tatgcttaaagaataattagctagctatttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttc |
193 |
Q |
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| T |
23682170 |
tatgcttaaagaataattagctagctatttgcctaatgg---attattgatcttttgttctatatggaaatattcctatcatgtaatccatttc |
23682260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 4645890 - 4645810
Alignment:
| Q |
5 |
tggagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgc |
85 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
4645890 |
tggagatcaatggagtgatattcttggaaccaatactggtgaaaggactttcaagctccctgatcccctctactacattgc |
4645810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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