View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0519_high_5 (Length: 419)
Name: NF0519_high_5
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 30346111 - 30346517
Alignment:
| Q |
1 |
cttgtactgcaccatgtgcagataaattttctacttattagatcaacaagtcacgtcatatcacatttgatctaatgatattatagtaagatttatctgc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30346111 |
cttgtactgcaccatgcgcagataaattttctacttattagatcaacaagtcacgtcatatcacatttgatctaatgatattatagtaagacttat---- |
30346206 |
T |
|
| Q |
101 |
gcatggttgaaacaagctcaaacaagctcgtgtatgatgtaaatcttgtctcacttgtgtaccataaaattgatgttaaattagtctcttaaattagaga |
200 |
Q |
| |
|
|| || || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346207 |
---tgattcaatg--gttgaaacaagctcgtgtatgatgtaaatcttgtctcacttgtgtaccataaaattgatgttaaattagtctcttaaattagaga |
30346301 |
T |
|
| Q |
201 |
actttggttattaatttagtcnnnnnnncttaattcagtaccataactttaaagttttaatgtttgtcttgataatcttgtcnnnnnnnnnnnngtttgt |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30346302 |
actttggttattaatttagtctttttttcttaattcagtaccataactttaaagttttaatgtttgtcttgataatcttgt---aaaaaaaaaagtttgt |
30346398 |
T |
|
| Q |
301 |
cttgataaacatgagactattcaaagcattatctagtactttagtgcacggaataaattgactgacactcagattttcctttcccaattgcgagaataat |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
30346399 |
cttgataaacatgagactattcaaggcattatctagtactttagtgcacggaataaattgactgacactcaaattttcctttcccaattgcgagattaat |
30346498 |
T |
|
| Q |
401 |
tcaagttctgaagtgttac |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30346499 |
tcaagttctgaagtgttac |
30346517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 326 times since January 2019
Visitors: 3649