View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_high_8 (Length: 389)
Name: NF0519_high_8
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 3332444 - 3332093
Alignment:
| Q |
9 |
tcaatgagatgaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactc |
108 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332444 |
tcaatgacaagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactc |
3332345 |
T |
|
| Q |
109 |
acgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaactttgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332344 |
acgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaacttcgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggac |
3332245 |
T |
|
| Q |
209 |
ggttacaaacgtgacactaaggcaaccggcttctcctggggctgttgttacacttcatggaaggttcgagattctttcgctggctggatcgtttcttcca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332244 |
ggttacaaacgtgacactaaggcaaccggcttctcctggagctgttgttacacttcatggaaggttcgagattctttcgctggctggatcgtttcttcca |
3332145 |
T |
|
| Q |
309 |
ccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggac |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332144 |
ccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggac |
3332093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 13212892 - 13212814
Alignment:
| Q |
19 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
97 |
Q |
| |
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|||||||||||||||||||||| || || |||||||||||||||||||| || |||||||| | |||||||| ||||| |
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| T |
13212892 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
13212814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32803278 - 32803230
Alignment:
| Q |
19 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
67 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
32803230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
19 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
67 |
Q |
| |
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|||||||||||||||||||| | || || |||||||||||||||||||| |
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| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 32809738 - 32809703
Alignment:
| Q |
19 |
gaagaccaagaggaagaccagctggatccaaaaaca |
54 |
Q |
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|
|||||||||||||||||||| ||||||||||||||| |
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|
| T |
32809738 |
gaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 46200911 - 46200964
Alignment:
| Q |
27 |
agaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcaca |
80 |
Q |
| |
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|||||| | ||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
46200911 |
agaggacgtccacctggctcaaaaaacaaaccaaaaccacctattatcatcaca |
46200964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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