View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_10 (Length: 369)
Name: NF0519_low_10
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 32121313 - 32121420
Alignment:
| Q |
175 |
actaaaagttctaaagcttatgcaccttattgaaagttttcaagtaaactctttattggaaaatgctcttcccccatcaggaattgctcgctcccaacta |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
32121313 |
actaaaagttctaaagcttatgcaccttattgaaagttttcaagtaaactctttactggaaaatgctcttcccccgtcacgaattgctcgctcccaacca |
32121412 |
T |
|
| Q |
275 |
aactttca |
282 |
Q |
| |
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|||||||| |
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| T |
32121413 |
aactttca |
32121420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 32122523 - 32122586
Alignment:
| Q |
279 |
ttcaccttgtatgaaaacttcaaaggaaacactacaacacaattttactagtactttagaatgt |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32122523 |
ttcaccttgtatgaaaacttcaaaggaaacactacaacacaattttactagtactttagaatgt |
32122586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 53214288 - 53214335
Alignment:
| Q |
234 |
aaaatgctcttcccccatcaggaattgctcgctcccaactaaactttc |
281 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
53214288 |
aaaatgctctcctcccatcaaaaattgctcgctcccaactaaactttc |
53214335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 28009282 - 28009235
Alignment:
| Q |
235 |
aaatgctcttcccccatcaggaattgctcgctcccaactaaactttca |
282 |
Q |
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||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
28009282 |
aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttca |
28009235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 28066585 - 28066538
Alignment:
| Q |
235 |
aaatgctcttcccccatcaggaattgctcgctcccaactaaactttca |
282 |
Q |
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||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
28066585 |
aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttca |
28066538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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