View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0519_low_12 (Length: 348)
Name: NF0519_low_12
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 53147458 - 53147775
Alignment:
| Q |
9 |
atcataggatcccatttctgtgactacaagcaattatnnnnnnnntatatatgtcggtatgttttatttaaaagcattgtttagaaaataatcctatttt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53147458 |
atcataggatcccatttctgtgactacaagcaattataaaaaatatatatatgtcggtatgttttatttaaaagcattgtttagaaaataatcctatttt |
53147557 |
T |
|
| Q |
109 |
ataaataattttatttaattatgcactactataaaagataaggtggtcccccctacatgcctttcaatcatcatcatgtttcccaagatctacagatagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53147558 |
ataaataattttatttaattatgcactactataaaagataaggtggtcccccctacatgcctttcaatcatcatcatgtttcccaagatctacagatagc |
53147657 |
T |
|
| Q |
209 |
aaaaagtatgagggatccagaaagtcaggaatgttgacgtatcactgatttttatttatttccgtatcatatcaatccctaaaatattttatcattacac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53147658 |
aaaaagtatgagggatccagaaagtcaggaatgttgacgtatcactga-ttttatttatttccgtatcatatcaatccctaaaatattttatcattacac |
53147756 |
T |
|
| Q |
309 |
aaaaaagtcacggaagctt |
327 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53147757 |
aaaaaagtcacggaagctt |
53147775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 937 times since January 2019
Visitors: 3660