View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_13 (Length: 345)
Name: NF0519_low_13
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 7432497 - 7432214
Alignment:
| Q |
9 |
gagatgaagagaaaaaaggatcaataatttggaacaagaagcaaatctaataaaaatattagctatgaaaaaagattacatatgttacaattagttgaaa |
108 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
7432497 |
gagaagaagagaaaaaaggttcaataatttggaacaagaagcaaatctaataaaaagattaactatgaaaaaagattacatatgttacacttagttgaaa |
7432398 |
T |
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| Q |
109 |
ataaaccaccaaccaattaaggtcaaacgaagtctaaatagtcgaatgattgtattagaacaccaacgaacgatagaaaaataaaataaaagaatatcgc |
208 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
7432397 |
ataaaccaccaatcaattaaggtcaaatgaagtctaaatagtcgaatgattgtattagaacaccaacaaacgataaaaaaataaaataaaagaatatcgc |
7432298 |
T |
|
| Q |
209 |
aagacacatagacacatactttgttcatgtagtttgacaaa---taatgcacacttttgcgactatagaacaactaaatctctaata |
292 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
7432297 |
aagacacatagacacatact---ttcatgtagtttgacaaatagtaatgtacacttttgcgactataaaacaactaaatctctaata |
7432214 |
T |
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