View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_2 (Length: 700)
Name: NF0519_low_2
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 33 - 324
Target Start/End: Complemental strand, 47426387 - 47426089
Alignment:
| Q |
33 |
atacttgaatatgttaggaatgatgatttatatgaagaggtgaggagaaattagtagaggctggggatcgaaagggaggatnnnnnnntaaatgatggtg |
132 |
Q |
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| T |
47426387 |
atacgtgaatatgttaggaatgat---ttatatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtg |
47426291 |
T |
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| Q |
133 |
gtaatgtggatgttacggtggtatataatgacacaaatcgtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat- |
231 |
Q |
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| T |
47426290 |
ttaatgtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaatt |
47426191 |
T |
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| Q |
232 |
----------caaatttacacgcctaaaatgattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtt |
321 |
Q |
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| T |
47426190 |
aaaaacaagacaaatttacacgcctaaaatgattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtt |
47426092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 336 - 530
Target Start/End: Complemental strand, 47426007 - 47425813
Alignment:
| Q |
336 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
435 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
436 |
caactaattcatgtggtcgataagctattgatctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
530 |
Q |
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| T |
47425907 |
caactaattcatgtggtcaatccgcaattgatctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 612 - 692
Target Start/End: Complemental strand, 47425731 - 47425651
Alignment:
| Q |
612 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccacgacacttgattagtag |
692 |
Q |
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| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtag |
47425651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47426438 - 47426404
Alignment:
| Q |
1 |
acaaaacttgatgtatgttttgtggcaatgctata |
35 |
Q |
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| T |
47426438 |
acaaaacttgatgtatgttttgtagcaatgctata |
47426404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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