View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_21 (Length: 256)
Name: NF0519_low_21
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 2515464 - 2515666
Alignment:
| Q |
38 |
catcatcatttagttgcaagtaggggtgacaaaattgataaattgaatggatttgaactaagagattaaaacaattcattgatccattaaaaatccacta |
137 |
Q |
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| T |
2515464 |
catcatcatttagttgcaaataggggtgacaaaattgataaattgaatggatttgaactaagagattaaaacaattcattgatccattaaaaatccacta |
2515563 |
T |
|
| Q |
138 |
aaatttgtttaaaataatctaattcaattcatccactgaacataaaaatcatccaatccatttgctttaatggttcctgctggctgctacaattctcctc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2515564 |
aaatttgtttaaaataatctaattcaattcatccactgaacataaaaatcatccaatccatttgctttaatggttcctgctggctgctacatttctcctc |
2515663 |
T |
|
| Q |
238 |
att |
240 |
Q |
| |
|
||| |
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| T |
2515664 |
att |
2515666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 14664618 - 14664653
Alignment:
| Q |
105 |
aaaacaattcattgatccattaaaaatccactaaaa |
140 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
14664618 |
aaaacaattcattaatccattaaaaatccactaaaa |
14664653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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