View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0519_low_22 (Length: 248)

Name: NF0519_low_22
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0519_low_22
NF0519_low_22
[»] chr1 (7 HSPs)
chr1 (30-248)||(52066821-52067039)
chr1 (53-107)||(16306515-16306569)
chr1 (52-140)||(43859088-43859176)
chr1 (42-96)||(47210079-47210133)
chr1 (52-137)||(22336459-22336545)
chr1 (84-140)||(28016580-28016637)
chr1 (52-113)||(48252444-48252505)
[»] chr4 (6 HSPs)
chr4 (56-113)||(31053016-31053073)
chr4 (36-140)||(55259905-55260009)
chr4 (52-148)||(32585779-32585876)
chr4 (42-100)||(30546442-30546500)
chr4 (55-137)||(45994774-45994856)
chr4 (52-113)||(37538098-37538159)
[»] chr6 (6 HSPs)
chr6 (45-111)||(8514110-8514176)
chr6 (55-137)||(26280920-26281003)
chr6 (43-100)||(24766041-24766098)
chr6 (56-138)||(6836285-6836368)
chr6 (54-109)||(3205691-3205744)
chr6 (77-140)||(10153209-10153273)
[»] chr5 (4 HSPs)
chr5 (47-113)||(4264076-4264142)
chr5 (53-137)||(14717309-14717394)
chr5 (43-98)||(32892048-32892103)
chr5 (52-108)||(42347693-42347749)
[»] chr2 (7 HSPs)
chr2 (57-115)||(15756246-15756304)
chr2 (63-113)||(1465766-1465816)
chr2 (52-148)||(40288145-40288240)
chr2 (52-110)||(34820112-34820170)
chr2 (43-100)||(27671323-27671380)
chr2 (81-113)||(11591343-11591375)
chr2 (81-113)||(11603264-11603296)
[»] chr7 (9 HSPs)
chr7 (53-110)||(45429287-45429344)
chr7 (52-103)||(21906730-21906781)
chr7 (44-137)||(23540183-23540277)
chr7 (57-114)||(7314535-7314592)
chr7 (53-109)||(30017447-30017503)
chr7 (43-98)||(18358819-18358874)
chr7 (55-113)||(18358816-18358874)
chr7 (88-132)||(24097345-24097389)
chr7 (81-113)||(28243183-28243215)
[»] chr8 (9 HSPs)
chr8 (58-141)||(42109594-42109678)
chr8 (43-141)||(25332007-25332106)
chr8 (59-102)||(32185228-32185271)
chr8 (42-100)||(25826711-25826769)
chr8 (44-113)||(10172429-10172498)
chr8 (88-145)||(25487649-25487707)
chr8 (53-141)||(24889470-24889559)
chr8 (52-109)||(35948714-35948771)
chr8 (77-140)||(24810670-24810734)
[»] chr3 (3 HSPs)
chr3 (35-95)||(42606166-42606225)
chr3 (43-140)||(8173127-8173223)
chr3 (43-110)||(35970464-35970531)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 52066821 - 52067039
Alignment:
Q  30 gtataaaatgacatgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacatattaaatatacgtgta 129  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  52066821 gtataaaatgacgtgttgtcaaatcaattaatggatatgacaactcttgtattttcatattcattaattgacatgacagcatatattaaatatatgtgta 52066920  T
Q  130 aaataattgtatattaacacgtttggcgacatagaaatatgttgtgcttcagcaatgttaattgacccttagattgactgttcttcaacattcaaaatat 229  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  52066921 aaataattgtatattaacatgtttggcgacatagaaatatgatgtgcttaagcaatgataattgacccttaaattgattgttcttcaacattcaaaatat 52067020  T
Q  230 ggtggagactttcaaagtt 248  Q
    |||||| ||||||||||||    
T  52067021 ggtggaaactttcaaagtt 52067039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 16306569 - 16306515
Alignment:
Q  53 tcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgaca 107  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  16306569 tcaattaacgagtatgacaactcatgtattttcatattcattaattgacatgaca 16306515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 43859088 - 43859176
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacatattaaatatacgtgtaaaataattgta 140  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||| |||||  || |||||||||||||||  | ||||||| ||||||||    
T  43859088 atcaattaatgaatataacaactcgtgtatttttatatttattgattgatgtggcaacacatattaaatgcatgtgtaaattaattgta 43859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 47210133 - 47210079
Alignment:
Q  42 atgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaa 96  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||||| |||||    
T  47210133 atgttgtcacataaattaatgaatatgacaactcttgtatttttatatttattaa 47210079  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 22336459 - 22336545
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataatt 137  Q
    |||||||||||||||||||||||| ||| |||| | ||| ||||  ||||||  |||| ||| |||||||||| ||| |||||||||    
T  22336459 atcaattaatgaatatgacaactcgtgtgtttttaaatttattatatgacatagcaacgcatcattaaatatatgtgcaaaataatt 22336545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 28016637 - 28016580
Alignment:
Q  84 tcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgta 140  Q
    |||||||| |||||||| |||||||||||| ||| ||| || ||||||||||||||||    
T  28016637 tcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgta 28016580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 48252444 - 48252505
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    |||||||||| ||||||| ||||| |||||||||||||| |||| || |  |||||||||||    
T  48252444 atcaattaataaatatgataactcatgtattttcatatttattagttcatttgacaacacat 48252505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 31053016 - 31053073
Alignment:
Q  56 attaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||||    
T  31053016 attaatgaatatgacaactcgtgtgttttcatattcattaattgacgcgacaacacat 31053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 55259905 - 55260009
Alignment:
Q  36 aatgacatgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaata 134  Q
    ||||| || |||||| |||||||||||||||||| ||  | ||| ||||||||||||| ||||||||||||||||||| |||| ||| | | ||||||||    
T  55259905 aatgatatattgtcacatcaattaatgaatatgataaa-catgtgttttcatattcatcaattgacatgacaacacatcattagatacatgcgtaaaata 55260003  T
Q  135 attgta 140  Q
    ||||||    
T  55260004 attgta 55260009  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 32585876 - 32585779
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgtatattaaca 148  Q
    |||||||| |||||||  |||||| | | |||| ||||| |||||||||||||||||||||| ||| |||| || |||||||||||| || |||||||    
T  32585876 atcaattattgaatatagcaactcatatgtttttatattaattaattgacatgacaacacatcatttaatagacatgtaaaataattatacattaaca 32585779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 30546500 - 30546442
Alignment:
Q  42 atgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattga 100  Q
    |||||||||  | ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  30546500 atgttgtcacgttaattagtgaataagacaactcatgtattttcatattcattaattga 30546442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 45994774 - 45994856
Alignment:
Q  55 aattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacaca-tattaaatatacgtgtaaaataatt 137  Q
    ||||||||||| ||| ||||| ||| | |||| ||||||||||| || |||||||||| |||| |||||| |||||||||||||    
T  45994774 aattaatgaatgtgataactcgtgt-tcttcaaattcattaattcacgtgacaacacattatttaatatatgtgtaaaataatt 45994856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 37538159 - 37538098
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    ||||||||||||||  |||||||| | | ||||||||||||||||||||  || ||||||||    
T  37538159 atcaattaatgaatgcgacaactcatatgttttcatattcattaattgatgtggcaacacat 37538098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 8514176 - 8514110
Alignment:
Q  45 ttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacac 111  Q
    |||||| |||||||||| ||||||||||||||| | |||| || ||||||||| |||||||||||||    
T  8514176 ttgtcacatcaattaataaatatgacaactcttatgtttttatcttcattaatcgacatgacaacac 8514110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 26280920 - 26281003
Alignment:
Q  55 aattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataatt 137  Q
    ||||||||||||| ||||||| | | ||||||||||||| |||| |||| ||||||||| ||| |||| | |||||||||||||    
T  26280920 aattaatgaatataacaactcatatgttttcatattcatcaattaacatcacaacacatcatttaatacatgtgtaaaataatt 26281003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 24766041 - 24766098
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattga 100  Q
    ||||| || |||||||||||||||||||||| | ||| |||||||||| |||||||||    
T  24766041 tgttgccacatcaattaatgaatatgacaacgcatgtgttttcatatttattaattga 24766098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 6836285 - 6836368
Alignment:
Q  56 attaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattg 138  Q
    |||||||||||||| ||| | | | |||  ||||||||||||||||| |||||||||| ||| |||||| | ||||||||||||    
T  6836285 attaatgaatatgagaacccatatgtttctatattcattaattgacacgacaacacatcattgaatatatgcgtaaaataattg 6836368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 3205744 - 3205691
Alignment:
Q  54 caattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaac 109  Q
    ||||||||||||||||||||||  || ||||| |||||||||||| ||||| ||||    
T  3205744 caattaatgaatatgacaactc--gtgttttcttattcattaatttacatggcaac 3205691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 10153209 - 10153273
Alignment:
Q  77 tgtattttcatattcattaattgacatgacaacaca-tattaaatatacgtgtaaaataattgta 140  Q
    |||||||||| ||| |||||||||| |||||||||| |||| |||  | ||||||||||||||||    
T  10153209 tgtattttcagatttattaattgacgtgacaacacattattgaatgcatgtgtaaaataattgta 10153273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 4264076 - 4264142
Alignment:
Q  47 gtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    |||| |||| |||||||||| ||||| || | |||||||||||||||||||| ||||||||||||||    
T  4264076 gtcacatcagttaatgaatacgacaaatcatatattttcatattcattaattaacatgacaacacat 4264142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 14717309 - 14717394
Alignment:
Q  53 tcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataatt 137  Q
    ||||||||| |||||| ||||||  || ||||||||||||||||||||  ||||||||||| |||| ||  | |||||||||||||    
T  14717309 tcaattaataaatatggcaactcacgtgttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 32892103 - 32892048
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaatt 98  Q
    ||||| || |||||| |||||||| |||||||| ||| ||||||||||||||||||    
T  32892103 tgttgccacatcaatcaatgaatacgacaactcatgtgttttcatattcattaatt 32892048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 42347693 - 42347749
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaa 108  Q
    |||||| ||||||||| ||||||| | | |||||||| |||||||||||| ||||||    
T  42347693 atcaatgaatgaatataacaactcatttgttttcatactcattaattgacgtgacaa 42347749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 15756304 - 15756246
Alignment:
Q  57 ttaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacatat 115  Q
    ||||||||||||| ||||  ||| ||||||||||||||||||||| |||||||||||||    
T  15756304 ttaatgaatatgagaacttatgtgttttcatattcattaattgacgtgacaacacatat 15756246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 1465816 - 1465766
Alignment:
Q  63 aatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    ||||||||||||| ||| |||||||||| |||||||||| |||||||||||    
T  1465816 aatatgacaactcgtgtgttttcatatttattaattgacgtgacaacacat 1465766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 40288145 - 40288240
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgtatattaaca 148  Q
    |||||||||||||||| | || ||||  ||| | ||||| |||||||||| |||||| | || ||||||| || ||||||||||||||||||||||||    
T  40288145 atcaattaatgaatataataaatctt--attcttatatttattaattgacgtgacaatatattattaaatgtatgtgtaaaataattgtatattaaca 40288240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 34820170 - 34820112
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaaca 110  Q
    ||||||||| || || ||||||||||   ||||||||||||||||||||| ||||||||    
T  34820170 atcaattaaagagtacgacaactcttaagttttcatattcattaattgacgtgacaaca 34820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 27671323 - 27671380
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattga 100  Q
    |||||||| || ||||||||||||| | ||||| |||  |||||||||||||||||||    
T  27671323 tgttgtcacataaattaatgaatataataactcatgtgctttcatattcattaattga 27671380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 11591375 - 11591343
Alignment:
Q  81 ttttcatattcattaattgacatgacaacacat 113  Q
    ||||||||||||||||||||| |||||||||||    
T  11591375 ttttcatattcattaattgacgtgacaacacat 11591343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 11603296 - 11603264
Alignment:
Q  81 ttttcatattcattaattgacatgacaacacat 113  Q
    ||||||||||||||||||||| |||||||||||    
T  11603296 ttttcatattcattaattgacgtgacaacacat 11603264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 45429287 - 45429344
Alignment:
Q  53 tcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaaca 110  Q
    ||||||||||||| ||||| ||| | |||||||||||||||||||||||||| |||||    
T  45429287 tcaattaatgaatgtgacatctcatttattttcatattcattaattgacatggcaaca 45429344  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 21906730 - 21906781
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacat 103  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||||||    
T  21906730 atcaattaattaatatgacaacttatgtgttttcatattcattaattgacat 21906781  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 23540277 - 23540183
Alignment:
Q  44 gttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataatt 137  Q
    ||||||| |||||||||| |||| ||||| || | ||||||||||||||||||| ||| ||| ||||||| |||| ||| | ||| |||||||||    
T  23540277 gttgtcacatcaattaataaataagacaattcatatattttcatattcattaatagacgtgataacacatcattagatacatgtgcaaaataatt 23540183  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 7314535 - 7314592
Alignment:
Q  57 ttaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacata 114  Q
    ||||||||||||||||||  | |||||| ||||| |||||||||||| ||||||||||    
T  7314535 ttaatgaatatgacaactaatatatttttatatttattaattgacataacaacacata 7314592  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 30017447 - 30017503
Alignment:
Q  53 tcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaac 109  Q
    |||| ||||||||||| || ||| |||||||| |||||||||||||||| |||||||    
T  30017447 tcaactaatgaatatgtcagctcatgtattttgatattcattaattgacgtgacaac 30017503  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 18358819 - 18358874
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaatt 98  Q
    ||||||||  |||||||||||||||||||| || ||| ||||||| ||||||||||    
T  18358819 tgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaatt 18358874  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 18358874 - 18358816
Alignment:
Q  55 aattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    |||||||||| |||| ||| | ||  || ||||||||||||||||||||||||||||||    
T  18358874 aattaatgaacatgaaaacacatgacttgtcatattcattaattgacatgacaacacat 18358816  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 24097389 - 24097345
Alignment:
Q  88 attcattaattgacatgacaacacatattaaatatacgtgtaaaa 132  Q
    ||||||||| | | ||||||||| |||||||||||||||||||||    
T  24097389 attcattaaataatatgacaacatatattaaatatacgtgtaaaa 24097345  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 28243215 - 28243183
Alignment:
Q  81 ttttcatattcattaattgacatgacaacacat 113  Q
    |||||||||||||||||||| ||||||||||||    
T  28243215 ttttcatattcattaattgatatgacaacacat 28243183  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 42109594 - 42109678
Alignment:
Q  58 taatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgtat 141  Q
    ||||||||||| |||||| |||||||| |||||||||||||||| | || |||||| | |||||  | |||||||||||||||||    
T  42109594 taatgaatatggcaactcatgtattttaatattcattaattgacgtaacgacacatcactaaatgcatgtgtaaaataattgtat 42109678  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 25332007 - 25332106
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgtat 141  Q
    |||||| | ||||| |||||||||||||||||| |||||||| ||||| |||||||||  ||  ||||||| ||| ||| || |||||||| ||||||||    
T  25332007 tgttgttacatcaactaatgaatatgacaactcgtgtatttttatattaattaattgatgtgggaacacatcattgaatgtatgtgtaaaaaaattgtat 25332106  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 32185271 - 32185228
Alignment:
Q  59 aatgaatatgacaactcttgtattttcatattcattaattgaca 102  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  32185271 aatgaatatgacaactcatgtgttttcatattcattaattgaca 32185228  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 25826711 - 25826769
Alignment:
Q  42 atgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattga 100  Q
    ||||||||||||||| |||| |||||||||||   |||||||| |||||||||||||||    
T  25826711 atgttgtcaaatcaaataataaatatgacaaccaatgtatttttatattcattaattga 25826769  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 10172498 - 10172429
Alignment:
Q  44 gttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat 113  Q
    |||||||  ||||||| ||||||||||||||| | | |||||| |||||||||||||| | |||||||||    
T  10172498 gttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaattgacgtaacaacacat 10172429  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 25487649 - 25487707
Alignment:
Q  88 attcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgtatatta 145  Q
    |||||||||||||| || |||||||| ||| |||||| ||||||||||||| |||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataattatatatta 25487707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 24889559 - 24889470
Alignment:
Q  53 tcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacaca-tattaaatatacgtgtaaaataattgtat 141  Q
    ||||||||||||||| |||||||  |  |||| ||||| ||||||||| |||  |||||| |||| ||||||  ||||||||||||||||    
T  24889559 tcaattaatgaatataacaactcaagcgtttttatattaattaattgatatgggaacacattattgaatatatttgtaaaataattgtat 24889470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 35948771 - 35948714
Alignment:
Q  52 atcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaac 109  Q
    |||||||| |||||||||||| || | | |||| ||||| ||||||||||||||||||    
T  35948771 atcaattagtgaatatgacaattcatatgtttttatatttattaattgacatgacaac 35948714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 24810670 - 24810734
Alignment:
Q  77 tgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgta 140  Q
    |||||||||||| ||||||||| ||| || ||||| | |||||||||| || |||||||||||||    
T  24810670 tgtattttcatactcattaattaacacgataacacgtcattaaatatatgtataaaataattgta 24810734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 42606166 - 42606225
Alignment:
Q  35 aaatgacatgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcatta 95  Q
    ||||||||| ||||||  | | |||||||||||| ||||||||||||||||||||||||||    
T  42606166 aaatgacattttgtcatgttatttaatgaatatg-caactcttgtattttcatattcatta 42606225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 8173223 - 8173127
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaacacat-attaaatatacgtgtaaaataattgta 140  Q
    ||||| || |||||||||||||||| |||||||  || |||| ||||||||||||| || |||||||| || |||| ||| |  |||||||||||||||    
T  8173223 tgttgccatatcaattaatgaatataacaactc--gtgtttttatattcattaattaacgtgacaacatatcattagatacatatgtaaaataattgta 8173127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 35970464 - 35970531
Alignment:
Q  43 tgttgtcaaatcaattaatgaatatgacaactcttgtattttcatattcattaattgacatgacaaca 110  Q
    ||||||||  ||||||||||||||||||  ||  ||| |||||||||| |||||||||| ||||||||    
T  35970464 tgttgtcacgtcaattaatgaatatgacggcttatgtgttttcatatttattaattgacgtgacaaca 35970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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