View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_26 (Length: 204)
Name: NF0519_low_26
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 2623442 - 2623580
Alignment:
| Q |
18 |
gatgaaatagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
117 |
Q |
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| T |
2623442 |
gatgaaatagaaggtcacaaagctataaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
2623541 |
T |
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| Q |
118 |
aaggattctcgattaaaattgatgctggaaaatcgacag |
156 |
Q |
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| T |
2623542 |
aaggattttcgattaaatttgatgctggaaaatcgacag |
2623580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 2591898 - 2592036
Alignment:
| Q |
18 |
gatgaaatagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttc |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
2591898 |
gatgaaatagaaggttacaaagctgaaaagttaataggaaaaattgaattttgtgatgtttattttgcatatccgtctagaccaaatgtgatgatttttg |
2591997 |
T |
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| Q |
118 |
aaggattctcgattaaaattgatgctggaaaatcgacag |
156 |
Q |
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| T |
2591998 |
aaggattctcgattaaaattgatgccggaaaatcaacag |
2592036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 2569361 - 2569214
Alignment:
| Q |
29 |
aggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattctcg |
128 |
Q |
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| T |
2569361 |
aggttacaaagctgaaaaattaataggaataattgaactttttgatgtacattttgcatatccggctagacctaatgtgatgatttttcaagggttctcg |
2569262 |
T |
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| Q |
129 |
attaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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| T |
2569261 |
attaaaattgatgctggaaaatcgacagctttggtaggggaaagtggt |
2569214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 2672740 - 2672589
Alignment:
| Q |
25 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
124 |
Q |
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||||| ||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
2672740 |
tagaaagttaccaagctgaaaagttaataggaaaaattgaacttcgtgatgtatatttttcatatccagctagacctaatgttatgatttttcaaggatt |
2672641 |
T |
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| Q |
125 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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| T |
2672640 |
ctcgattaaaattgatgcaggaaaatcaacggctttggtaggggaaagtggt |
2672589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 2596924 - 2596773
Alignment:
| Q |
25 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
124 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| | ||||||||||| || |
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| T |
2596924 |
tagaaggttacagagctgaaaaattaataggaaaaattgaacttcgtgatgtatattttgcatatccaggtagacctaatgttacaatttttcaagggtt |
2596825 |
T |
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| Q |
125 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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|||||||||||||||||| ||||||||||| | |||| | |||||||||||| |
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| T |
2596824 |
ctcgattaaaattgatgcaggaaaatcgacggctttggtaggggaaagtggt |
2596773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 2641578 - 2641429
Alignment:
| Q |
27 |
gaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattct |
126 |
Q |
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|||||||||||||| ||||| || ||||| ||||||||| || ||||||| |||||||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
2641578 |
gaaggttacaaagccaaaaatttgatagggaaaattgaacttcttgatgtagattttgcatatccgggtagacctaatgtgatgatctttcaagggttct |
2641479 |
T |
|
| Q |
127 |
cgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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| T |
2641478 |
caattaaaatcgacgctggaaaatcgacggctttggtcggggaaagtggt |
2641429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 2450686 - 2450835
Alignment:
| Q |
27 |
gaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggattct |
126 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || || |||||||| |||| |
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| T |
2450686 |
gaaggttacaaagtagaaaagttgataggaaaaattgaatttcatgatgtacattttgcatatccgtctaggcctaatgcaatcatctttcaagggttct |
2450785 |
T |
|
| Q |
127 |
cgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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||||||||||| ||| || ||||| || | |||| | |||||||||||| |
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| T |
2450786 |
cgattaaaattaatgtcggtaaatcaacggctttggtcggggaaagtggt |
2450835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 2439959 - 2440110
Alignment:
| Q |
25 |
tagaaggttacaaagctaaaaagttaataggaaaaattgaattttgtgatgtatattttgcatatccgtctagacctaatgtgatgatttttcaaggatt |
124 |
Q |
| |
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||||||||| || |||| ||||||| ||||||||||||| |||| ||| ||| ||||| |||||||| |||| |||||||||||| | |||||||| || |
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| T |
2439959 |
tagaaggtttcagagctgaaaagttgataggaaaaattgtatttcatgacgtacatttttcatatccggctaggcctaatgtgatggtctttcaagggtt |
2440058 |
T |
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| Q |
125 |
ctcgattaaaattgatgctggaaaatcgacaggtttgatgggggaaagtggt |
176 |
Q |
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||| ||| ||||||| || |||||||| || | |||| | |||||||||||| |
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| T |
2440059 |
ctctattgaaattgacgccggaaaatcaacggctttggttggggaaagtggt |
2440110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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