View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0519_low_4 (Length: 533)
Name: NF0519_low_4
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0519_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 47 - 533
Target Start/End: Original strand, 53147085 - 53147568
Alignment:
| Q |
47 |
atcatcaaagcataacagccccatcatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctacc |
146 |
Q |
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| T |
53147085 |
atcatcaaagcataacagccccattatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctacc |
53147184 |
T |
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| Q |
147 |
ttcttaaaattatacagtttcatgtagcttatagatcactactatgatttgagttactactactactaagtactgtaatagcttaatgttttaaaaatta |
246 |
Q |
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| T |
53147185 |
ttcttaaaaatatacagtttcatgtagcttatagatcactactatgatttgagttact---actactaactactgtaatagcttaatgttttaaaaatta |
53147281 |
T |
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| Q |
247 |
aacaacaatttatttcgtggatctacattggttattctgcacatggtaattcaattcaatctcatggttatttttgtattaattaattccaatgtttgta |
346 |
Q |
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| T |
53147282 |
aacaacaatttatttcgtggatctacattggttattctgcacatggtaattcaattcaatctcatggttatttttgtcttaattaattccaatgtttgta |
53147381 |
T |
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| Q |
347 |
aaattggaagggaatgatgttagtaaaatcacgtcacgtgccatgaannnnnnnggtggaactgccggtggttgtaatcataggatcccatttctgtgac |
446 |
Q |
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| T |
53147382 |
aaattggaagagaatgatgttagtaaaatcatgtcacgtgccatgattttttttggtggaactgccggtggttgtaatcataggatcccatttctgtgac |
53147481 |
T |
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| Q |
447 |
tacaagcaattatnnnnnnnntatatatgtcggtatgttttatttaaaagcattgtttagaaaataatcctattttataaataattt |
533 |
Q |
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| T |
53147482 |
tacaagcaattataaaaaatatatatatgtcggtatgttttatttaaaagcattgtttagaaaataatcctattttataaataattt |
53147568 |
T |
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