View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0519_low_5 (Length: 493)

Name: NF0519_low_5
Description: NF0519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0519_low_5
NF0519_low_5
[»] chr8 (14 HSPs)
chr8 (220-378)||(31968705-31968862)
chr8 (220-341)||(31973383-31973503)
chr8 (8-125)||(31973570-31973687)
chr8 (41-125)||(31968930-31969014)
chr8 (8-125)||(22107754-22107870)
chr8 (220-261)||(6663393-6663434)
chr8 (220-261)||(6671063-6671104)
chr8 (8-120)||(12843975-12844086)
chr8 (49-124)||(15061258-15061332)
chr8 (49-124)||(25852951-25853026)
chr8 (58-88)||(22072888-22072918)
chr8 (69-119)||(31999852-31999901)
chr8 (72-124)||(24487840-24487890)
chr8 (49-90)||(24655297-24655338)
[»] chr1 (8 HSPs)
chr1 (220-308)||(34294514-34294601)
chr1 (8-125)||(22486178-22486294)
chr1 (58-125)||(6205626-6205693)
chr1 (58-124)||(44910862-44910928)
chr1 (58-125)||(6197775-6197842)
chr1 (49-124)||(18098443-18098518)
chr1 (71-124)||(1961727-1961779)
chr1 (72-124)||(44832478-44832529)
[»] chr7 (17 HSPs)
chr7 (15-125)||(26123568-26123678)
chr7 (8-125)||(793982-794098)
chr7 (8-125)||(3432925-3433040)
chr7 (9-125)||(16273444-16273559)
chr7 (25-124)||(12607985-12608083)
chr7 (8-125)||(809774-809890)
chr7 (8-125)||(3424594-3424709)
chr7 (8-125)||(16265776-16265892)
chr7 (8-125)||(37285994-37286110)
chr7 (54-110)||(15683223-15683279)
chr7 (72-124)||(28415242-28415294)
chr7 (49-88)||(8913416-8913455)
chr7 (58-124)||(6851933-6851999)
chr7 (58-124)||(19244396-19244462)
chr7 (58-124)||(34139055-34139121)
chr7 (58-119)||(1858493-1858554)
chr7 (72-124)||(34132743-34132795)
[»] scaffold0016 (2 HSPs)
scaffold0016 (8-125)||(58592-58707)
scaffold0016 (58-124)||(14175-14241)
[»] scaffold0031 (1 HSPs)
scaffold0031 (15-125)||(18227-18336)
[»] scaffold0582 (1 HSPs)
scaffold0582 (8-125)||(292-408)
[»] chr4 (9 HSPs)
chr4 (49-124)||(20548449-20548523)
chr4 (8-125)||(3356413-3356529)
chr4 (8-125)||(3366079-3366195)
chr4 (7-125)||(10220359-10220475)
chr4 (15-124)||(49889993-49890101)
chr4 (49-124)||(4619859-4619933)
chr4 (15-121)||(25984403-25984508)
chr4 (50-125)||(16431-16504)
chr4 (73-124)||(16368580-16368631)
[»] scaffold0815 (1 HSPs)
scaffold0815 (50-124)||(4965-5038)
[»] scaffold0050 (1 HSPs)
scaffold0050 (49-124)||(41185-41262)
[»] scaffold0014 (1 HSPs)
scaffold0014 (72-125)||(179159-179212)
[»] chr3 (24 HSPs)
chr3 (8-125)||(3683896-3684012)
chr3 (9-122)||(20433787-20433899)
chr3 (9-122)||(20447713-20447825)
chr3 (8-125)||(41430910-41431026)
chr3 (49-125)||(14252468-14252543)
chr3 (58-124)||(30102375-30102441)
chr3 (48-124)||(2212092-2212166)
chr3 (50-125)||(8615883-8615955)
chr3 (50-123)||(15619764-15619836)
chr3 (50-123)||(15627112-15627184)
chr3 (49-124)||(8606230-8606305)
chr3 (49-124)||(12550479-12550553)
chr3 (58-125)||(14740065-14740131)
chr3 (49-124)||(23288044-23288119)
chr3 (58-124)||(11180838-11180904)
chr3 (50-124)||(16014170-16014243)
chr3 (8-125)||(30020577-30020694)
chr3 (51-124)||(68215-68288)
chr3 (51-124)||(74308-74381)
chr3 (50-125)||(8623752-8623824)
chr3 (72-124)||(8612713-8612765)
chr3 (50-125)||(11325741-11325814)
chr3 (49-124)||(13105561-13105636)
chr3 (49-124)||(13111709-13111784)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-124)||(362778-362861)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-124)||(23651-23725)
[»] scaffold0007 (1 HSPs)
scaffold0007 (220-261)||(61620-61661)
[»] chr6 (9 HSPs)
chr6 (16-125)||(1624931-1625039)
chr6 (8-125)||(20075423-20075539)
chr6 (8-125)||(22067227-22067343)
chr6 (220-261)||(30114797-30114838)
chr6 (8-125)||(22069235-22069350)
chr6 (49-88)||(7245433-7245472)
chr6 (49-124)||(25690843-25690916)
chr6 (49-124)||(25697636-25697709)
chr6 (58-124)||(26896534-26896599)
[»] scaffold1890 (1 HSPs)
scaffold1890 (58-124)||(871-936)
[»] scaffold0046 (1 HSPs)
scaffold0046 (58-124)||(86617-86683)
[»] chr5 (19 HSPs)
chr5 (15-125)||(34459310-34459419)
chr5 (15-125)||(34473567-34473676)
chr5 (50-125)||(5435650-5435723)
chr5 (50-125)||(5449470-5449543)
chr5 (50-125)||(25450535-25450608)
chr5 (58-124)||(23378224-23378290)
chr5 (58-124)||(25532946-25533012)
chr5 (49-119)||(37048412-37048480)
chr5 (16-125)||(37575857-37575966)
chr5 (16-125)||(37584969-37585078)
chr5 (50-125)||(1797566-1797638)
chr5 (50-125)||(1805307-1805379)
chr5 (50-125)||(7254995-7255067)
chr5 (50-125)||(7262437-7262509)
chr5 (58-119)||(25526266-25526327)
chr5 (49-124)||(20092675-20092750)
chr5 (49-109)||(22704554-22704612)
chr5 (50-125)||(25677786-25677859)
chr5 (49-124)||(36454695-36454770)
[»] scaffold0435 (1 HSPs)
scaffold0435 (49-125)||(8296-8370)
[»] scaffold0125 (1 HSPs)
scaffold0125 (16-125)||(8173-8280)
[»] chr2 (12 HSPs)
chr2 (72-125)||(19657400-19657452)
chr2 (50-125)||(22934289-22934362)
chr2 (50-125)||(22940252-22940325)
chr2 (50-125)||(22954147-22954220)
chr2 (49-88)||(22518921-22518960)
chr2 (58-124)||(11873762-11873827)
chr2 (49-123)||(27343883-27343955)
chr2 (49-125)||(45489253-45489327)
chr2 (49-124)||(18211-18286)
chr2 (72-124)||(5871032-5871084)
chr2 (72-124)||(5874173-5874225)
chr2 (49-125)||(15814249-15814324)
[»] scaffold0920 (1 HSPs)
scaffold0920 (58-125)||(591-656)
[»] scaffold0075 (1 HSPs)
scaffold0075 (50-125)||(56129-56202)
[»] scaffold0039 (1 HSPs)
scaffold0039 (49-124)||(89795-89871)
[»] scaffold0206 (1 HSPs)
scaffold0206 (58-125)||(9015-9081)
[»] scaffold0328 (1 HSPs)
scaffold0328 (58-124)||(97-163)
[»] scaffold0051 (1 HSPs)
scaffold0051 (15-125)||(58757-58865)
[»] scaffold0253 (2 HSPs)
scaffold0253 (72-124)||(10431-10483)
scaffold0253 (72-124)||(19856-19908)
[»] scaffold0085 (1 HSPs)
scaffold0085 (72-124)||(7717-7769)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 220 - 378
Target Start/End: Complemental strand, 31968862 - 31968705
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttttaacaaaatccatatttcaatcctggcctatagatacaatcatcaactaaaaaacagg 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  31968862 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt-aacagaatccatatttcaatcctggcctataaatacaaccatcaactaaaaaacagg 31968764  T
Q  320 accaccgataaaaacacattaacaaccaatttttcaacacacaatttcacggccataac 378  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  31968763 acctccgataaaaacacattaacaaccaaattttcaacacacaatttcacagccataac 31968705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 31973503 - 31973383
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttttaacaaaatccatatttcaatcctggcctatagatacaatcatcaactaaaaaacagg 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  31973503 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt-aacagaatccatatttcaatcctggcctataaatacaaccatcaactaaaaaacagg 31973405  T
Q  320 accaccgataaaaacacattaa 341  Q
    ||||||||||||||||||||||    
T  31973404 accaccgataaaaacacattaa 31973383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 31973687 - 31973570
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| ||||||| || |||||||| ||| ||||||||| ||||||||||||||||||  ||  |  ||||||||||||| |||||||||||||| |||    
T  31973687 cagcactgacacgtatcatttaactctgaccgatctcagccttttcagtgaaaaattcggcaggaaaatattttaaaataccccatattttagttctgag 31973588  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  31973587 tcgggccctcttctctca 31973570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 31969014 - 31968930
Alignment:
Q  41 tctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||| |||||| ||||||||||||||   |||||||||||||||| |||||||||  |||||| ||||||||||||||||||    
T  31969014 tctcagccttttcaatgaaaaattcgataagaaggtattttaaaataccccatattttgattccgaatcggaccctcttctctca 31968930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22107870 - 22107754
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||| ||| |||||||| ||| ||||||| |||||||||| ||||  |||  || |||||||||||||||||  |||| ||| ||||||||    
T  22107870 cagcactgacacgcgtcgtttaactctgaccgatctcaacattttcagtaaaaatgtcggcagggaggtattttaaaatacctcata-tttggttccgag 22107772  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  22107771 tcgggccctcttctctca 22107754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 6663393 - 6663434
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6663393 gtccccttgttcccaagccaaggcaaactttgtctgtccttt 6663434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 6671063 - 6671104
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  6671063 gtccccttgttcccaagccaaggcaaactttgtctgtccttt 6671104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 12843975 - 12844086
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||  ||| ||||||||| |||  ||  ||||||| |  ||| ||||||||||||||||  |||||||| ||||||||    
T  12843975 cagcactgacacgtgtcatttaactttgaccgatctcagcctttcgagc-aaaaatttggcagaaaggtattttaaaatacctcatattttggttccgag 12844073  T
Q  108 tcggaccctcttc 120  Q
    |||| ||||||||    
T  12844074 tcgggccctcttc 12844086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 15061332 - 15061258
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||| |||||||||||  || |||||||||||||||||  ||| ||||| ||||||||||| ||||||| ||||    
T  15061332 ttttcaatgaaaaattcggcagggaggtattttaaaatacctcatttttta-ttccgagtcgggccctcttttctc 15061258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 25853026 - 25852951
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||| |||||||||  || |||||||||||||||||  ||| ||||  || |||||||||||||||| ||||    
T  25853026 ttttcagtaaaaaattcggcagggaggtattttaaaatacctcattttttgatttcgagtcggaccctcttttctc 25852951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 22072918 - 22072888
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatac 88  Q
    |||||||||||||||||||||||||||||||    
T  22072918 aaaaattcgatagagaggtattttaaaatac 22072888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 31999852 - 31999901
Alignment:
Q  69 agagaggtattttaaaatactccatattttagttccgagtcggaccctctt 119  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||||||||||    
T  31999852 agagaggtattttaaaatacctcatttttta-ttccgagtcggaccctctt 31999901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 24487890 - 24487840
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  |||  ||| |||||||||||||||||||||||||    
T  24487890 gaggtattttaaaatacctcat--tttggttccgagtcggaccctcttctctc 24487840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 24655338 - 24655297
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactc 90  Q
    ||||||||||||||||||  |||||||||||| |||||||||    
T  24655338 ttttcagtgaaaaattcggcagagaggtatttaaaaatactc 24655297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 34294601 - 34294514
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttttaacaaaatccatatttcaatcctggcctatagatacaatcatcaac 308  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  34294601 gtccccttgttcccaagccaaggcaaactttgtccgtccttt-aacaaaatccatatttcaatcctggcctataaatacaaccatcaac 34294514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22486294 - 22486178
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  22486294 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 22486196  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  22486195 tcgggccctcttctctca 22486178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 6205693 - 6205626
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||  ||||||||||||||||||||  ||| |||| |||||||||||| |||||||||||||    
T  6205693 aaaaattcggcagagaggtattttaaaatacctcattttttggttccgagtcgggccctcttctctca 6205626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 44910928 - 44910862
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  ||||||||||||||||||||  ||| |||| |||||||||||||| ||||||||||    
T  44910928 aaaaattcggcagagaggtattttaaaatacctcattttttggttccgagtcggacactcttctctc 44910862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 6197842 - 6197775
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||  ||||||||||||||||||||  ||| |||| |||| ||||||| |||||||||||||    
T  6197842 aaaaattcggcagagaggtattttaaaatacctcattttttggttctgagtcgggccctcttctctca 6197775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 18098443 - 18098518
Alignment:
Q  49 ttttcagtg-aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||| |||||||||| |  |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  18098443 ttttcagtggaaaaattcgacatggaggtattttaaaatacctcatttttta-ttccgagtcggaccctcttttctc 18098518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 1961727 - 1961779
Alignment:
Q  71 agaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  1961727 agaggtattttaaaatacctcatttttta-ttccgagtcggaccctcttttctc 1961779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 44832529 - 44832478
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  44832529 gaggtattttaaaatacctcatttttta-ttccgagtcggaccctcttttctc 44832478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 26123568 - 26123678
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||||||| |||||| ||||||||| ||||| |||||| | |||| ||||| ||  | ||||||||||||||  |||||||| |||||||||||| ||    
T  26123568 gacacgtgtcctttaaccccgactgatgtcagccttttcattaaaaatttcgacaggaaagtattttaaaatacctcatattttggttccgagtcgggcc 26123667  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  26123668 ctcttctctca 26123678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 794098 - 793982
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  794098 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 794000  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  793999 tcgggccctcttctctca 793982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 3433040 - 3432925
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  3433040 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagc-aaaaattcggcagggaggtattttaaaatacctcatagttaa-ttccgag 3432943  T
Q  108 tcggaccctcttctctca 125  Q
    ||||||||||||||||||    
T  3432942 tcggaccctcttctctca 3432925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 16273559 - 16273444
Alignment:
Q  9 agcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagt 108  Q
    ||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  ||||||||||||||||||||  |||| || | ||||||||    
T  16273559 agcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagagaggtattttaaaatacctcatagttga-ttccgagt 16273461  T
Q  109 cggaccctcttctctca 125  Q
    | | |||||||||||||    
T  16273460 caggccctcttctctca 16273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 12608083 - 12607985
Alignment:
Q  25 ttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||| | | ||| | ||||||||||||||||||  || |||||||||||||||||  ||||  || |||||||||||| ||||||||||||    
T  12608083 ttttaactccgaccggtttcaaccttttcagtgaaaaattcggcagggaggtattttaaaatacctcata-attggttccgagtcgggccctcttctctc 12607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 809890 - 809774
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  809890 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 809792  T
Q  108 tcggaccctcttctctca 125  Q
    |||| || ||||||||||    
T  809791 tcgggccttcttctctca 809774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 3424709 - 3424594
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  ||||  ||| |||||||    
T  3424709 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgag-caaaaattcggcagggaggtattttaaaatacctcata-gttaattccgag 3424612  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  3424611 tcgggccctcttctctca 3424594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 16265892 - 16265776
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  ||||||||||||||||||||  |||| || | |||||||    
T  16265892 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagagaggtattttaaaatacctcatagttga-ttccgag 16265794  T
Q  108 tcggaccctcttctctca 125  Q
    || | ||||||| |||||    
T  16265793 tcaggccctcttgtctca 16265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 37285994 - 37286110
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||| ||||||| | |||||||  ||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  37285994 cagcactgacacgtgtcatttagctccgaccggtctcagcccttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 37286092  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  37286093 tcgggccctcttctctca 37286110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 15683223 - 15683279
Alignment:
Q  54 agtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcg 110  Q
    |||||||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||    
T  15683223 agtgaaaaattcgacaaagaagtattttaaaatacctcattttttagttccgagtcg 15683279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 28415242 - 28415294
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  28415242 gaggtattttaaaatacctcattttttaattccgagtcggaccctcttttctc 28415294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 8913455 - 8913416
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatac 88  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  8913455 ttttcagtgaaaaattcggcagagaggtattttaaaatac 8913416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 6851999 - 6851933
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  6851999 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 6851933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 19244462 - 19244396
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  ||||||||||||||| ||||  ||| |||| | | |||||||||||||||||||||    
T  19244462 aaaaattcggcagagaggtattttaatatacctcatttttttgcttcgagtcggaccctcttctctc 19244396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 34139121 - 34139055
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  34139121 aaaaattcggaagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 34139055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 1858554 - 1858493
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctctt 119  Q
    |||||||||  || |||||||||||||||||  ||| ||||  |||||||||||||||||||    
T  1858554 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctctt 1858493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 34132795 - 34132743
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  34132795 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 34132743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 58707 - 58592
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||| ||||  | ||||||| ||||||   |||||||||||||||||||||||||||||||  ||||||| | |||||||    
T  58707 cagcactgacacgtgtcatttaaccccgatcggtctcagccttttcaaa-aaaaattcgatagagaggtattttaaaatacctcatatttga-ttccgag 58610  T
Q  108 tcggaccctcttctctca 125  Q
    ||| ||||||||||||||    
T  58609 tcgaaccctcttctctca 58592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 14175 - 14241
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  14175 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 14241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 18336 - 18227
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||||||| |||||| ||||| ||||||||| |||||||  |||||||||  || || ||||||||||||||  ||| ||| | ||||||||||||||    
T  18336 gacacgtgtcctttaaccccgaccgatctcagccttttcagaaaaaaattcggcagggaagtattttaaaatacctcatgtttga-ttccgagtcggacc 18238  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  18237 ctcttctctca 18227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 408 - 292
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  ||| ||||||||||||||||  ||||||| | |||||||    
T  408 cagcactgacacgtgtcatttaactccgaccggtctcagcttttcgagcaaaaaattcggcagaaaggtattttaaaatacctcatatttga-ttccgag 310  T
Q  108 tcggaccctcttctctca 125  Q
    ||||||||||||| ||||    
T  309 tcggaccctcttcactca 292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 20548449 - 20548523
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||||||||| || |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  20548449 ttttcagtgaaaaattcgacagggaggtattttaaaatacctcatttttta-ttccgagtcggaccctcttttctc 20548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 3356413 - 3356529
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  3356413 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 3356511  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  3356512 tcgggccctcttctctca 3356529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 3366079 - 3366195
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  3366079 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 3366177  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  3366178 tcgggccctcttctctca 3366195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 10220475 - 10220359
Alignment:
Q  7 gcagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccga 106  Q
    ||||||| |||||||||| |||||||||||| | ||||||| |||  |   |||| ||||||||  ||||||||||||||||  |||||||  ||||| |    
T  10220475 gcagcactgacacgtgtcatttaactccgaccggtctcagcctttcgaac-aaaatttcgataggaaggtattttaaaatacctcatatttg-gttccaa 10220378  T
Q  107 gtcggaccctcttctctca 125  Q
    |||||||||||||||||||    
T  10220377 gtcggaccctcttctctca 10220359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 49889993 - 49890101
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||| || ||||||||||||  | | ||||| |||||| ||||||||||| |||  ||||||||||||||||  ||||  || |||||||||||| ||    
T  49889993 gacacgagttttttaactccgatcggtttcagccttttcaatgaaaaattcggtaggaaggtattttaaaatacctcata-attggttccgagtcgggcc 49890091  T
Q  115 ctcttctctc 124  Q
    ||||||||||    
T  49890092 ctcttctctc 49890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 4619933 - 4619859
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||| ||||  ||||||||||||||||||||  ||| |||| |||||||||||| || |||||||||    
T  4619933 ttttcagtgaaaa-ttcggcagagaggtattttaaaatacctcattttttggttccgagtcgggccttcttctctc 4619859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 25984403 - 25984508
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||||||| ||| || | || ||||||| |  ||||||||||||||||||| | ||||||||||||||||||  ||| ||| | |||||||||| |||    
T  25984403 gacacgtgtcgtttgacgctgattgatctctgatttttcagtgaaaaattcgacaaagaggtattttaaaatacctcatgtttga-ttccgagtcgaacc 25984501  T
Q  115 ctcttct 121  Q
    || ||||    
T  25984502 cttttct 25984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 16431 - 16504
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||| ||||  ||||| ||||||||||||||  |||  |||| ||||||||||| |||||||||||||    
T  16431 tttcagtgaaaatttcggcagagaagtattttaaaatacctcat--tttatttccgagtcgggccctcttctctca 16504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 16368580 - 16368631
Alignment:
Q  73 aggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||||||  ||| |||| ||||| |||||||||||||||||||    
T  16368580 aggtattttaaaatacctcatttttttgttccaagtcggaccctcttctctc 16368631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 5038 - 4965
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||| |||||||||||  ||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||    
T  5038 tttcaatgaaaaattcggcagagaggtattttaaaatacttcat-tttttgttccgagtcgggccctcttctctc 4965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 41262 - 41185
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatat--tttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||| |  ||| |||||||||||||||||| ||||||    
T  41262 ttttcagtgaaaaattcgacagagaggtattttaaaatacctcattttctttggttccgagtcggaccctcatctctc 41185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 179212 - 179159
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  179212 gaggtattttaaaatacctcatattttagttccgagtcgggccctcttctctca 179159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 3683896 - 3684012
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  3683896 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 3683994  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  3683995 tcgggccctcttctctca 3684012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 20433787 - 20433899
Alignment:
Q  9 agcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagt 108  Q
    ||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | ||||||||    
T  20433787 agcactgacacgtgtcatttaactccgaccggtctcagcctttcaagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgagt 20433885  T
Q  109 cggaccctcttctc 122  Q
    ||| ||||||||||    
T  20433886 cgggccctcttctc 20433899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 20447713 - 20447825
Alignment:
Q  9 agcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagt 108  Q
    ||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | ||||||||    
T  20447713 agcactgacacgtgtcatttaactccgaccggtctcagcctttcaagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgagt 20447811  T
Q  109 cggaccctcttctc 122  Q
    ||| ||||||||||    
T  20447812 cgggccctcttctc 20447825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 41430910 - 41431026
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||| ||||  || |||||||||||||||||  |||| || | |||||||    
T  41430910 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaatttcggcagggaggtattttaaaatacctcatagttga-ttccgag 41431008  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  41431009 tcgggccctcttctctca 41431026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 14252468 - 14252543
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||||   | |||||||||||| |||||||||||||    
T  14252468 ttttcagtgaaaaattcggcagagaggtattttaaaatacctcata-ggtggttccgagtcgggccctcttctctca 14252543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 30102441 - 30102375
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  ||||||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  30102441 aaaaattcggcagagaggtattttaaaatacctcatttttttattccgagtcggaccctcttttctc 30102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 2212166 - 2212092
Alignment:
Q  48 attttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||| || |||||||||| |||||  ||  ||||| |||||||||||| ||||||||||||    
T  2212166 attttcagtgaaaatttcgacagggaggtattttgaaata--cctcattttggttccgagtcgggccctcttctctc 2212092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 8615883 - 8615955
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || |||||||||||||||||  ||   ||| |||||||||||| |||||||||||||    
T  8615883 tttcagtgaaaaattcggcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttctctca 8615955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 15619764 - 15619836
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctct 123  Q
    ||||| |||||||||||  ||||||||||||||||||||  ||| |||| ||| |||||| |||||||||||||    
T  15619764 tttcaatgaaaaattcggcagagaggtattttaaaatacctcat-ttttggttacgagtctgaccctcttctct 15619836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 15627112 - 15627184
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctct 123  Q
    ||||| |||||||||||  ||||||||||||||||||||  ||| |||| ||| |||||| |||||||||||||    
T  15627112 tttcaatgaaaaattcggcagagaggtattttaaaatacctcat-ttttggttacgagtctgaccctcttctct 15627184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 8606230 - 8606305
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||| ||||||| |  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  8606230 ttttcagtaaaaaatttggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 8606305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 12550479 - 12550553
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||| |||||||||  || |||||||||||||||||  ||| ||||| ||| ||||||||||||||| ||||    
T  12550479 ttttcagtaaaaaattcggcagggaggtattttaaaatacctcatttttta-ttcagagtcggaccctcttttctc 12550553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 14740131 - 14740065
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||  || |||||||||||||||||  ||||||| | ||||||||||| |||||||||||||    
T  14740131 aaaaattcggcagggaggtattttaaaatacctcatatttga-ttccgagtcgggccctcttctctca 14740065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 23288119 - 23288044
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||||||||  || |||||||||||||||||  ||| ||||  ||||| |||| |||||||| ||||    
T  23288119 ttttcagtgaaaaattcggcagggaggtattttaaaatacctcatttttttattccgggtcgaaccctcttttctc 23288044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 11180838 - 11180904
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||| ||  ||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  11180838 aaaaattcgacaggaaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 11180904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 16014170 - 16014243
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  |||| |||||||||||||||  || ||||  |||||||||||  ||||||||||||    
T  16014170 tttcagtgaaaaattcggcagaggggtattttaaaatacctca-atttaggttccgagtcgagccctcttctctc 16014243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 30020577 - 30020694
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcag-tgaaaaattcgatagagaggtattttaaaatactccatattttagttccga 106  Q
    |||||| |||||||| | |||||||||||| | ||||||| |||  ||   |||||||||  || |||||||||||||||||  ||||  ||| ||||||    
T  30020577 cagcactgacacgtggcatttaactccgaccggtctcagcctttcgagcaaaaaaattcggcagggaggtattttaaaatacctcata-gttaattccga 30020675  T
Q  107 gtcggaccctcttctctca 125  Q
    ||||| |||||||||||||    
T  30020676 gtcgggccctcttctctca 30020694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 68215 - 68288
Alignment:
Q  51 ttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||| ||||||||   || |||||||||||||||||| ||| ||||  ||||||||| ||||||||| ||||    
T  68215 ttcagtaaaaaattcagcagggaggtattttaaaatacttcattttttgattccgagtcagaccctcttttctc 68288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 74308 - 74381
Alignment:
Q  51 ttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||| ||||||||   || |||||||||||||||||| ||| ||||  ||||||||| ||||||||| ||||    
T  74308 ttcagtaaaaaattcagcagggaggtattttaaaatacttcattttttgattccgagtcagaccctcttttctc 74381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 8623752 - 8623824
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||||||||||||   || |||||||||||||||||  ||   ||| |||||||||||| |||||||||||||    
T  8623752 tttcagtgaaaaattctgcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttctctca 8623824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 8612713 - 8612765
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  8612713 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 8612765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 11325814 - 11325741
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||| |||||||||  || ||||||||||| |||||  |||  ||| |||||||||||| |||||||||||||    
T  11325814 tttcagtaaaaaattcggcagggaggtattttagaatacctcat--tttggttccgagtcgggccctcttctctca 11325741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13105636 - 13105561
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||| | ||||||||||||||||||| ||||    
T  13105636 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcatttttga-ttccgagtcggaccctcttttctc 13105561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13111784 - 13111709
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||| | ||||||||||||||||||| ||||    
T  13111784 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcatttttga-ttccgagtcggaccctcttttctc 13111709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 362861 - 362778
Alignment:
Q  40 atctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||  ||||||||||||||||||  |||||||||||||||| |||  ||| |||| |||||||||||| ||||||||||||    
T  362861 atctcagacttttcagtgaaaaattcggcagagaggtattttaaactacctcat-tttttgttccgagtcgggccctcttctctc 362778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 23651 - 23725
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||| |||||||||||| || |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  23651 ttttcaatgaaaaattcgacagggaggtattttaaaatacctcatttttta-ttccgagtcggaccctcttttctc 23725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 61620 - 61661
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  61620 gtccccttgttcccaagccaaggcaaactttgtctgtccttt 61661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 1624931 - 1625039
Alignment:
Q  16 acacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccc 115  Q
    ||||||||| |||||| |||||    |||||| |||| ||| |||||||||| |  |||||||||||||||||  ||||||| | ||||||||||| |||    
T  1624931 acacgtgtcctttaaccccgaccagcctcagcctttttagtaaaaaattcgacatggaggtattttaaaatacctcatatttga-ttccgagtcgggccc 1625029  T
Q  116 tcttctctca 125  Q
    ||||||||||    
T  1625030 tcttctctca 1625039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 20075539 - 20075423
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||||||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  20075539 cagcactgacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 20075441  T
Q  108 tcggaccctcttctctca 125  Q
     ||| |||||||||||||    
T  20075440 acgggccctcttctctca 20075423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22067343 - 22067227
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| |||||||||| |||| ||||||| ||||||| | |||  ||  |||||||||  || |||||||||||||||||  |||| || | |||||||    
T  22067343 cagcactgacacgtgtcatttagctccgaccgatctcaacctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttga-ttccgag 22067245  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  22067244 tcgggccctcttctctca 22067227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 30114797 - 30114838
Alignment:
Q  220 gtccccttgttcccaagtcaaggcaaactttgtctgtccttt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  30114797 gtccccttgttcccaagccaaggcaaactttgtctgtccttt 30114838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 22069350 - 22069235
Alignment:
Q  8 cagcacagacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgag 107  Q
    |||||| ||||| |||| ||||||| |||| | ||||||| |||  ||  |||||||||| || |||||||||||||||||  |||| || | |||||||    
T  22069350 cagcactgacacatgtcatttaacttcgaccggtctcagcctttcgagc-aaaaattcgacagggaggtattttaaaatacctcatagttga-ttccgag 22069253  T
Q  108 tcggaccctcttctctca 125  Q
    |||| |||||||||||||    
T  22069252 tcgggccctcttctctca 22069235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 7245472 - 7245433
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatac 88  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  7245472 ttttcagtgaaaaattcgacagggaggtattttaaaatac 7245433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 25690843 - 25690916
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||| ||||  || ||| |||||||||||||  ||| ||||| ||||||||||||||||||||||||    
T  25690843 ttttcagtgaaaa-ttcggcagggagttattttaaaatacctcatttttta-ttccgagtcggaccctcttctctc 25690916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 25697636 - 25697709
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    ||||||||||||| ||||  || ||| |||||||||||||  ||| ||||| ||||||||||||||||||||||||    
T  25697636 ttttcagtgaaaa-ttcggcagggagttattttaaaatacctcatttttta-ttccgagtcggaccctcttctctc 25697709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 26896534 - 26896599
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  |||||||||||||||||||| |||| ||||  |||||||| |||||||||| ||||    
T  26896534 aaaaattcggcagagaggtattttaaaataccccat-ttttgattccgagttggaccctcttttctc 26896599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1890 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1890
Description:

Target: scaffold1890; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 936 - 871
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  ||||||||||||||| ||||  ||| |||| |||||||||||||||||||||||||    
T  936 aaaaattcggcagagaggtattttaatatacctcatttttt-gttccgagtcggaccctcttctctc 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 86683 - 86617
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||| ||||||||||||||||||| ||||    
T  86683 aaaaattcggcagggaggtattttaaaatacctcattttttaattccgagtcggaccctcttttctc 86617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 34459310 - 34459419
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||||||| |||||||||||| | ||||||| |||  ||  |||| ||||  || |||||||||||||||||  |||| || | ||||||||||| ||    
T  34459310 gacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaatttcggcagggaggtattttaaaatacctcatagttga-ttccgagtcgggcc 34459408  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  34459409 ctcttctctca 34459419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 34473567 - 34473676
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    |||||||||| |||||||||||| | ||||||| |||  ||  |||| ||||  || |||||||||||||||||  |||| || | ||||||||||| ||    
T  34473567 gacacgtgtcatttaactccgaccggtctcagcctttcgagcaaaaatttcggcagggaggtattttaaaatacctcatagttga-ttccgagtcgggcc 34473665  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  34473666 ctcttctctca 34473676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 5435723 - 5435650
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  5435723 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 5435650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 5449543 - 5449470
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  5449543 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 5449470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 25450608 - 25450535
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  25450608 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 25450535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 23378290 - 23378224
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  23378290 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 23378224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 25532946 - 25533012
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  25532946 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 25533012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 37048412 - 37048480
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctctt 119  Q
    ||||||||||||| ||||  ||||||||||||||||||||  ||| ||||| ||||||||||| |||||||    
T  37048412 ttttcagtgaaaa-ttcggcagagaggtattttaaaatacctcatttttta-ttccgagtcgggccctctt 37048480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 37575857 - 37575966
Alignment:
Q  16 acacgtgtcttttaa-ctccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    ||||||||| ||||| ||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| ||  |||||||||||| ||    
T  37575857 acacgtgtcatttaaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttg-gttccgagtcgggcc 37575955  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  37575956 ctcttctctca 37575966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 37584969 - 37585078
Alignment:
Q  16 acacgtgtcttttaa-ctccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    ||||||||| ||||| ||||||| | ||||||| |||  ||  |||||||||  || |||||||||||||||||  |||| ||  |||||||||||| ||    
T  37584969 acacgtgtcatttaaactccgaccggtctcagcctttcgagcaaaaaattcggcagggaggtattttaaaatacctcatagttg-gttccgagtcgggcc 37585067  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  37585068 ctcttctctca 37585078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 1797566 - 1797638
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || |||||||||||||||||  ||   ||| |||||||||||| ||||||| |||||    
T  1797566 tttcagtgaaaaattcggcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttttctca 1797638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 1805307 - 1805379
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || |||||||||||||||||  ||   ||| |||||||||||| ||||||| |||||    
T  1805307 tttcagtgaaaaattcggcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttatctca 1805379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 7255067 - 7254995
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||| ||||||||||  || |||||||||||||||||  ||   ||| |||||||||||| |||||||||||||    
T  7255067 tttcagcgaaaaattcggcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttctctca 7254995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 7262509 - 7262437
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||| ||||||||||  || |||||||||||||||||  ||   ||| |||||||||||| |||||||||||||    
T  7262509 tttcagcgaaaaattcggcagggaggtattttaaaatacctca---ttttgttccgagtcgggccctcttctctca 7262437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 25526266 - 25526327
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctctt 119  Q
    |||||||||  || |||||||||||||||||  ||| ||||  |||||||||||||||||||    
T  25526266 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctctt 25526327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 20092750 - 20092675
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||||| || |||||||||||||||| ||||    
T  20092750 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcatttttta-tttcgagtcggaccctcttttctc 20092675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 22704554 - 22704612
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtc 109  Q
    ||||||||||||| ||||| ||||||||||||||||||||  ||| |||| ||||||||||    
T  22704554 ttttcagtgaaaa-ttcgacagagaggtattttaaaatacctcat-ttttggttccgagtc 22704612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 25677859 - 25677786
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||| ||||  || |||||||||| ||||||  |||  |||  |||||||||||||||||||||||||    
T  25677859 tttcagtgaaaatttcggcagggaggtattttgaaatacctcat--tttgattccgagtcggaccctcttctctca 25677786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 36454695 - 36454770
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||| | ||||||||||||||||||| ||||    
T  36454695 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcatttttga-ttccgagtcggaccctcttttctc 36454770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 8370 - 8296
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||||||||| |||   ||||||||||||| ||||||  |  |||||| |||||||||||||||||||||||||    
T  8370 ttttcagtgaaaatttcagcagagaggtattttgaaatac--ctaattttaattccgagtcggaccctcttctctca 8296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 8173 - 8280
Alignment:
Q  16 acacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccc 115  Q
    ||||||||| |||||| ||||  ||| ||||| |||||| | |||| ||||| | ||||||||||||||||||  |||| ||| |||||||||||  |||    
T  8173 acacgtgtcctttaac-ccgatcgatgtcagccttttcattaaaaatttcgacaaagaggtattttaaaatacctcata-tttggttccgagtcgagccc 8270  T
Q  116 tcttctctca 125  Q
    ||||||||||    
T  8271 tcttctctca 8280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 19657452 - 19657400
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  ||||||| | |||||||||||||||||||||||||    
T  19657452 gaggtattttaaaatacctcatatttga-ttccgagtcggaccctcttctctca 19657400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 22934289 - 22934362
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  22934289 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 22934362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 22940252 - 22940325
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  22940252 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 22940325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 22954147 - 22954220
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||||||||  || ||||||||||||||||  ||  |||||  ||||||||||| |||||||||||||    
T  22954147 tttcagtgaaaaattcggcagggaggtattttaaaata--cctcattttgtttccgagtcgggccctcttctctca 22954220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 22518960 - 22518921
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatac 88  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  22518960 ttttaagtgaaaaactcgatagagaggtattttaaaatac 22518921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 11873762 - 11873827
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||| || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  11873762 aaaaattcgacagggaggtattttaaaatacctcat-ttttcattccgagtcggaccctcttttctc 11873827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 27343955 - 27343883
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctct 123  Q
    ||||||||||||||||||  || |||||||||||||||||   || |||| ||||||||| ||||||||||||||    
T  27343955 ttttcagtgaaaaattcggcag-gaggtattttaaaataccttat-ttttggttccgagttggaccctcttctct 27343883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 45489327 - 45489253
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    ||||||||||||| ||||  ||||||||||||| |||||  ||  |||||  ||||||||||| |||||||||||||    
T  45489327 ttttcagtgaaaatttcggcagagaggtattttgaaata--cctcattttgattccgagtcgggccctcttctctca 45489253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 18286 - 18211
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||| | ||||||||||||||||||| ||||    
T  18286 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcatttttga-ttccgagtcggaccctcttttctc 18211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 5871084 - 5871032
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  5871084 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 5871032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 5874225 - 5874173
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  5874225 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 5874173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 15814324 - 15814249
Alignment:
Q  49 ttttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||| ||||||| | || ||||||||||||||||||  |||| ||| |||||||||||| || | ||||||||    
T  15814324 ttttcagtaaaaaattagttaaagaggtattttaaaatacctcata-tttggttccgagtcgggccatattctctca 15814249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 591 - 656
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||| | | ||||||||||||||||  | |||||| |||||||||||| |||||||||||||    
T  591 aaaaattcgacaaaaaggtattttaaaatac--cttattttggttccgagtcgggccctcttctctca 656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 56129 - 56202
Alignment:
Q  50 tttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||||| ||||  ||||| ||||||||||||||  |||  |||| ||||||||||| |||||||||||||    
T  56129 tttcagtgaaaatttcggcagagaagtattttaaaatacctcat--tttatttccgagtcgggccctcttctctca 56202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 89871 - 89795
Alignment:
Q  49 ttttcagtgaaaaa-ttcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||| ||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  89871 ttttcagtgaaaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 89795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 9081 - 9015
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctca 125  Q
    |||||||||  || |||||||||||||||||  ||||||| | ||||||||||| |||||||||||||    
T  9081 aaaaattcggcagggaggtattttaaaatacctcatatttga-ttccgagtcgggccctcttctctca 9015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 163 - 97
Alignment:
Q  58 aaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||  || |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  163 aaaaattcggcagggaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 58865 - 58757
Alignment:
Q  15 gacacgtgtcttttaactccgactgatctcagcattttcagtgaaaaattcgatagagaggtattttaaaatactccatattttagttccgagtcggacc 114  Q
    ||||||||||  ||||| ||||| ||| ||||| |||||| | |||||||||  || ||| |||||||||||||  |||| || | ||||||||||| ||    
T  58865 gacacgtgtccgttaaccccgaccgatgtcagccttttcatt-aaaaattcggcagggagatattttaaaatacctcatagttga-ttccgagtcgggcc 58768  T
Q  115 ctcttctctca 125  Q
    |||||||||||    
T  58767 ctcttctctca 58757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 10431 - 10483
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  10431 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 10483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 19856 - 19908
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  19856 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 19908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 7769 - 7717
Alignment:
Q  72 gaggtattttaaaatactccatattttagttccgagtcggaccctcttctctc 124  Q
    |||||||||||||||||  ||| ||||  ||||||||||||||||||| ||||    
T  7769 gaggtattttaaaatacctcattttttgattccgagtcggaccctcttttctc 7717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 38 times since January 2019
Visitors: 3646