View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0520_high_12 (Length: 322)

Name: NF0520_high_12
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0520_high_12
NF0520_high_12
[»] chr2 (11 HSPs)
chr2 (12-294)||(29507142-29507424)
chr2 (12-289)||(29518085-29518362)
chr2 (16-275)||(29510981-29511240)
chr2 (12-243)||(29535267-29535498)
chr2 (41-235)||(29549036-29549230)
chr2 (50-240)||(29541430-29541620)
chr2 (66-235)||(29490449-29490618)
chr2 (53-235)||(29488339-29488521)
chr2 (50-183)||(29505433-29505566)
chr2 (66-235)||(30256551-30256720)
chr2 (54-222)||(29502538-29502706)
[»] chr4 (1 HSPs)
chr4 (55-234)||(51266291-51266470)
[»] chr8 (1 HSPs)
chr8 (54-218)||(18874593-18874757)
[»] scaffold0186 (1 HSPs)
scaffold0186 (54-153)||(9161-9260)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 29507424 - 29507142
Alignment:
Q  12 acagagaagaagacttaagcaataaaagccctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttg 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507424 acagagaagaagacttaagcaacaaaagccctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttg 29507325  T
Q  112 tgaatctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507324 tgaatctttaattgctgttcaatatattgatgaggtttggaatgataaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgg 29507225  T
Q  212 gctgattatattgataagaaggtatataaatttacccttttctatgattcatcattgcatgtgattgtttgttggttatagtt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29507224 gctgattatattgataagaaggtatataaatttacccttttctatgattcatcattgcatgtgattgtttgttggttatagtt 29507142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 29518362 - 29518085
Alignment:
Q  12 acagagaagaagacttaagcaataaaagccctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttg 111  Q
    ||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||    
T  29518362 acagagaagaagatttaaggaacaaaagccctttgttgttacaaatgaaccctgttcataagaaaatccctgttcttattcataatggtaaatcaatttg 29518263  T
Q  112 tgaatctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgg 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||    
T  29518262 tgaatctttaattgctgttcagtatattgatgaggtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctagattctgg 29518163  T
Q  212 gctgattatattgataagaaggtatataaatttacccttttctatgattcatcattgcatgtgattgtttgttggtta 289  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29518162 gctgattatgttgataagaaggtatattaatttacccttttctatgattcatcattgcatgtgattgtttgttggtta 29518085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 29511240 - 29510981
Alignment:
Q  16 agaagaagacttaagcaataaaagccctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaa 115  Q
    ||||||||| ||||| || || |||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| || ||||||||    
T  29511240 agaagaagatttaaggaacaagagccctttgttgttacaaatgaaccctgttcataagaaaatcccagttcttattcataatggtaaatcaatttgtgaa 29511141  T
Q  116 tctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctg 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  29511140 tctttaattgctgttcaatatattgatgaagtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctagattctgggctg 29511041  T
Q  216 attatattgataagaaggtatataaatttacccttttctatgattcatcattgcatgtga 275  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29511040 attatgttgataagaaggtatattaatttacccttttctatgattcatcattgcatgtga 29510981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 29535498 - 29535267
Alignment:
Q  12 acagagaagaagacttaagcaataaaagccctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttg 111  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||    
T  29535498 acagagaagaagacttaagcaacaaaagccctttgttgttacaaatgaaccctattcacaagaaaatccctgttctaattcataatggtaaatcaatttg 29535399  T
Q  112 tgaatctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgg 211  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| | |||||||||| ||||||    
T  29535398 tgaatctttaatggctgttcagtatattgatgaggtttggaatgagaaatcttctttgttgccttctgatccttatcagagatcacaagctaggttctgg 29535299  T
Q  212 gctgattatattgataagaaggtatataaatt 243  Q
    ||||||||| ||||||||||||||||||||||    
T  29535298 gctgattatgttgataagaaggtatataaatt 29535267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 29549230 - 29549036
Alignment:
Q  41 cctttgttgctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattg 140  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  29549230 cctttgttgctagaaatgaacccggttcagaagaaaatccctgttcttattcataatggaaaacccatttgtgaatctttaattgctgttcaatatattg 29549131  T
Q  141 atgaggtttggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggta 235  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||  ||| |||||||||||||||||||||||||||    
T  29549130 atgaagtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctttattttgggctgattatattgataagaaggta 29549036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 29541620 - 29541430
Alignment:
Q  50 ctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggttt 149  Q
    |||||||||||||| ||||||||||||||||| ||||| || || ||||| |||||  ||||||| ||  |  |   |||| | ||||||||||||||||    
T  29541620 ctacaaatgaacccggttcacaagaaaatcccggttctaatccacaatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggttt 29541521  T
Q  150 ggaatgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggtatataa 240  Q
    |||| || | ||||||||| |||||||||||||| || |||| ||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  29541520 ggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggtatataa 29541430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 29490449 - 29490618
Alignment:
Q  66 ttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcc 165  Q
    |||| |||||||| || ||||| ||||||||||| ||||| |||||||||||    |||  ||| || ||||| ||||||||||||||||| ||| ||||    
T  29490449 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 29490548  T
Q  166 tttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggta 235  Q
     ||| ||||||||||||| ||| ||| ||| ||||||||||| |||| ||||||||||||||| ||||||    
T  29490549 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 29490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 29488339 - 29488521
Alignment:
Q  53 caaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttgga 152  Q
    |||||||||||  ||||||| || || || ||||| || |||||||| ||| |  |||||||||||  ||||  ||| ||||| || ||||| |||||||    
T  29488339 caaatgaacccaattcacaacaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttgga 29488438  T
Q  153 atgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggta 235  Q
    |||| ||| || | ||| ||||||||||||| ||| ||| ||| ||||||||||| |||| |||||||| ||| || ||||||    
T  29488439 atgataaagcttcattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatagtgacaaaaaggta 29488521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 29505566 - 29505433
Alignment:
Q  50 ctacaaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggttt 149  Q
    ||||||||||| ||  ||||||||||||| || ||||| || |||||||| ||| |  ||||||| ||  ||| |  |||| ||||||||||||||||||    
T  29505566 ctacaaatgaatccaattcacaagaaaattccagttctaatccataatggcaaatccatttgtgagtcactaaatattgttgaatatattgatgaggttt 29505467  T
Q  150 ggaatgagaaatctcctttcttgccttctgatcc 183  Q
    |||||||  | |||||||| ||||||||||||||    
T  29505466 ggaatgatcattctccttttttgccttctgatcc 29505433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 30256720 - 30256551
Alignment:
Q  66 ttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaatgagaaatctcc 165  Q
    |||||||||| || || ||||| || |||||||| ||| |  |||||||||||  ||||  ||| ||||| || ||||| ||||||||||| ||| || |    
T  30256720 ttcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttc 30256621  T
Q  166 tttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggta 235  Q
     ||| || ||||| | || ||| ||||||| ||||||||||| |||| ||| |||| ||| || ||||||    
T  30256620 attcatgtcttctcacccttatgagaaagctcaagctagattttgggttgagtatagtgacaaaaaggta 30256551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 29502538 - 29502706
Alignment:
Q  54 aaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaa 153  Q
    ||||||||||  |||||||||| || || ||||| || |||||||| ||| |  |||||||||||  |||   ||| || || || ||||| ||||||||    
T  29502538 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaatcattgtgcagtacatagatgaagtttggaa 29502637  T
Q  154 tgagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatat 222  Q
    ||| ||| || | ||| |||| |||||||| ||| ||| ||| ||||||||||| |||  |||||||||    
T  29502638 tgataaagcttcattcatgccctctgatccgtatgagagagctcaagctagattttggtttgattatat 29502706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 234
Target Start/End: Complemental strand, 51266470 - 51266291
Alignment:
Q  55 aatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaat 154  Q
    |||||| || |||||||| ||| | || || || ||||||||||| || ||  |||||||||| || |||  |||| |||| ||||||||||| |||||     
T  51266470 aatgaatccagttcacaaaaaagttccagtccttattcataatgggaagcccatttgtgaatccttgattattgttgaatacattgatgaggtctggaaa 51266371  T
Q  155 gagaaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggt 234  Q
    ||  || |||| ||  ||||  | |||||| |||||| ||| ||||||||||| |||||||||| | ||||||| |||||    
T  51266370 gatcaaactccattgctgcccaccgatccacatcagagagctcaagctagattttgggctgattttgttgataataaggt 51266291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 18874757 - 18874593
Alignment:
Q  54 aaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaa 153  Q
    ||||||||||  |||||||||| || |||||||| || ||||| || |||||| ||| ||| ||  | |||  |||| ||||||||||||||||||||||    
T  18874757 aaatgaacccaattcacaagaagattcctgttcttatccataagggaaaaccaatttctgagtccatcattattgttgaatatattgatgaggtttggaa 18874658  T
Q  154 tgagaa-atctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgatt 218  Q
     || ||  || | |||| | || || ||||| ||||||||||| ||||| ||||| ||||||||||    
T  18874657 ggataaggtcccatttc-taccctcagatccttatcagaaagctcaagcaagattttgggctgatt 18874593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 9260 - 9161
Alignment:
Q  54 aaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaa 153  Q
    ||||||||||  |||||||||| || |||||||| || ||||| || |||||| ||| ||| ||  | |||  |||| ||||||||||||||||||||||    
T  9260 aaatgaacccaattcacaagaagattcctgttcttatccataagggaaaaccaatttctgagtccatcattattgttgaatatattgatgaggtttggaa 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 459 times since January 2019
Visitors: 3651