View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0520_high_5 (Length: 415)
Name: NF0520_high_5
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0520_high_5 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 25812420 - 25812046
Alignment:
| Q |
14 |
agaccatccaaggaacatcaactactactctagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacaca |
113 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812420 |
agaccatccaaggaacatcaactattactccagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacaca |
25812321 |
T |
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| Q |
114 |
actaaagagcacttgattcctctatacatgaaaggattaccacgacttgtatttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812320 |
actaaagagcacttgattcctctatacatgaaaggattaccacgacttgtatttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaat |
25812221 |
T |
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| Q |
214 |
caatgcaccttgctgccaatatttccactcttgaagctaaagctgccctgacaaagaaatccatttattgatcgctatgacgactaaaatattgaatttt |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812220 |
caatgcaccttgctgccaatatttgcactcttgaagctaaagctgccctgacaaagaaatccatttattgatcgctatgacgactaaaatattgaatttt |
25812121 |
T |
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| Q |
314 |
tagtagtaccatgcttnnnnnnnnntgtcggagccacttctgggttcatactaacaaccaaggacacacgttgtg |
388 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812120 |
tagtagtaccatgcttaaaaaaaaatctcggagccacttctgggttcatactaacaaccaaggacacacgttgtg |
25812046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 17258 - 17487
Alignment:
| Q |
27 |
aacatcaactactactctagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcact |
126 |
Q |
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||||||||||| |||||||||| | ||||||||| |||||||||||| ||||| ||||||| || || | |||||||||||||||||||||||||||| |
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| T |
17258 |
aacatcaactattactctagaaccgaacggactagaattttgagatacaaccaaagaatctctcaaaacgcgatccgataacacacaactaaagagcact |
17357 |
T |
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| Q |
127 |
tgattcctctatacatgaaaggattaccacgacttgtatttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgc |
226 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17358 |
tgattccactatacatgaaaggattaccacggcttgtatttctaaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgc |
17457 |
T |
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| Q |
227 |
tgccaatatttccactcttgaagctaaagc |
256 |
Q |
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|||||||| |||||||||||| |||||||| |
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| T |
17458 |
tgccaataattccactcttgaggctaaagc |
17487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 7684166 - 7684320
Alignment:
| Q |
70 |
gatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatgaaaggatt---accacgacttgtatt |
166 |
Q |
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|||| ||||||| ||||||| |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||| | ||| | ||||| ||| |
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| T |
7684166 |
gatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacaccgctacttgaatt |
7684265 |
T |
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| Q |
167 |
tcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcac |
221 |
Q |
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||||||||| |||||| ||||| |||||||| |||| | |||||||||| |||| |
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| T |
7684266 |
tcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcac |
7684320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 6984815 - 6984940
Alignment:
| Q |
22 |
caaggaacatcaactactactctagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaaga |
121 |
Q |
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|||||||||| | |||||||| ||| |||| ||||| |||||||||||| ||||||| | ||| | || | | ||||||||||||||||||||||| |
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| T |
6984815 |
caaggaacattatttactactccagagccaaatagactagaattttgagatacgaccaaggattctttaaaaatgcgatccgataacacacaactaaaga |
6984914 |
T |
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| Q |
122 |
g--cacttgattcctctatacatgaa |
145 |
Q |
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| T |
6984915 |
gcacacttgattcctctatacatgaa |
6984940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 7426184 - 7426134
Alignment:
| Q |
207 |
ctcaaatcaatgcaccttgctgccaatatttccactcttgaagctaaagct |
257 |
Q |
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|||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
7426184 |
ctcagatcaatgcacattgctaccaatatttccactcttgaagctaaagct |
7426134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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