View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0520_low_1 (Length: 590)
Name: NF0520_low_1
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0520_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-172; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 31012913 - 31013241
Alignment:
| Q |
30 |
tgaataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaag---gagattgtaaattgaagtccaatagggatat |
126 |
Q |
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| T |
31012913 |
tgaataatgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaagaaggagattgtaaatggaagtccaatagggatat |
31013012 |
T |
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| Q |
127 |
tgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaatgttctaatcacagtatgttttctatc |
226 |
Q |
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| T |
31013013 |
tgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaatgttctaatcacagtatgttttctatc |
31013112 |
T |
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| Q |
227 |
tctttatctcataacaaataaagtaggtttttgcggtaatcgtaacggtcgtgttgcaatgtttaatattgtagagaattataatcaaatgtgactgata |
326 |
Q |
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| T |
31013113 |
tctttatctcataacaaataaagtaggtttttgcggtaatcgtaacggtcgtgttgcaatgtttaatattgtagagaattataatcaaatgtgactgata |
31013212 |
T |
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| Q |
327 |
tggtctcattgacatacccgaacgaaaga |
355 |
Q |
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| T |
31013213 |
tggtctcattgacatacccgaacgaaaga |
31013241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 400 - 554
Target Start/End: Original strand, 31013241 - 31013396
Alignment:
| Q |
400 |
aatgcgactgatatagcctcatcgacagttagattgtgcatgagcctttatttaaaatccttcttaagaatttgtagttttgagtttctatttctatttt |
499 |
Q |
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| T |
31013241 |
aatgcgactgatatagcctcatcgacagttagattgtgcatgagcctttatttaaaatccttcttaagaatttgtagttttgagtttctatttctatttt |
31013340 |
T |
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| Q |
500 |
tggctttcctaatttggtgccaa-nnnnnnncccaattcctcctgcaactcctatg |
554 |
Q |
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| T |
31013341 |
tggctttcctaatttggtgccaattttttttcccaattcctcctgcaactcctatg |
31013396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 30959099 - 30959313
Alignment:
| Q |
33 |
ataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaagga---gattgtaaattgaagtccaatagggatattga |
129 |
Q |
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|||| ||||||||| ||||||||| | ||||||||||||| ||| ||||||||||||||||||| |||||||||| | || ||||| |||||||| |
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| T |
30959099 |
ataaggggtttgagttgaattatactatgaaagaggaatgctcaaggtgtttgggaagtgaaggaggagattgtaaatgggagagcaataatgatattga |
30959198 |
T |
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| Q |
130 |
gaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaatgttctaatcac---agtatgttttc-tat |
225 |
Q |
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| T |
30959199 |
gaaacatgtaaagtcctcgtgctattatgatgattgtttagatggatctgttgattcttccacacaacactgttctaatcacagaagtatgttttcttat |
30959298 |
T |
|
| Q |
226 |
ctctttatctcataa |
240 |
Q |
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| T |
30959299 |
ctctttatctcataa |
30959313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 31002482 - 31002534
Alignment:
| Q |
279 |
gttgcaatgtttaatattgtagagaattataatcaaatgtgactgatatggtc |
331 |
Q |
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| T |
31002482 |
gttgcaatttttaatattgtagagaatcacaaacaaatgtgactgatgtggtc |
31002534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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