View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0520_low_16 (Length: 297)
Name: NF0520_low_16
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0520_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 20517746 - 20517463
Alignment:
| Q |
7 |
ccattcaatatttgtgtaccttgaggatagttttcaggactaccaataccaacaaatgatttgttgttattaacattatcgacgaatatcaaccattttg |
106 |
Q |
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| T |
20517746 |
ccattcaatatttgtgtaccttgaggatagttttcaggaccaccaataccaacaaatgatttgttgttattaacattatcaacaaatatcaaccattttg |
20517647 |
T |
|
| Q |
107 |
atgattcaacacaactatccttatatacgagctcaatgtctagcgcggtattcgtgaagattaaactagccgggattattccgacggataagctgaattt |
206 |
Q |
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| T |
20517646 |
atgattcaacacaactatccttatatacgaactcaatgtctagcgcggtattcgtgaagattaaactagccgggattattccgacggataagctgaattt |
20517547 |
T |
|
| Q |
207 |
cacctgtcgaccgaaaatcattttttcaccatcttgtaacacaagaaaagaacaatctgaatcaacagttttacctagtataat |
290 |
Q |
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||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20517546 |
cacctgtcgaccgtaaatcattttttcatcatcctgtaacacaagaaaagaacaatctgaatcaacagttttacctagtgtaat |
20517463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 20505652 - 20505609
Alignment:
| Q |
77 |
taacattatcgacgaatatcaaccattttgatgattcaacacaa |
120 |
Q |
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| T |
20505652 |
taacattatcaataaatatcaaccattttgatgattcaacacaa |
20505609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 13072233 - 13072341
Alignment:
| Q |
6 |
accattcaatatttgtgtaccttgaggatagttttcaggactaccaataccaacaaatgatttgttgttattaacattatcgacgaatatcaaccatttt |
105 |
Q |
| |
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||||||||||||||| |||| |||||||||||| |||| ||||||||||||| | ||||| ||| | |||||||||| || ||||||||||||||| |
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| T |
13072233 |
accattcaatatttgcatacc---aggatagttttctggaccaccaataccaacacaagattt-ttg--aataacattatcaacaaatatcaaccatttt |
13072326 |
T |
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| Q |
106 |
gatgattcaacacaa |
120 |
Q |
| |
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|| |||||||||||| |
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| T |
13072327 |
gaagattcaacacaa |
13072341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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