View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0520_low_6 (Length: 401)

Name: NF0520_low_6
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0520_low_6
NF0520_low_6
[»] chr7 (2 HSPs)
chr7 (209-389)||(48846135-48846312)
chr7 (99-209)||(48845996-48846106)
[»] chr6 (2 HSPs)
chr6 (209-389)||(7016206-7016383)
chr6 (99-209)||(7016419-7016529)
[»] chr1 (1 HSPs)
chr1 (99-184)||(17725705-17725790)
[»] chr2 (5 HSPs)
chr2 (99-180)||(35376358-35376439)
chr2 (229-307)||(35378151-35378226)
chr2 (315-384)||(35379684-35379753)
chr2 (258-363)||(27354341-27354444)
chr2 (181-209)||(35376532-35376560)
[»] chr4 (3 HSPs)
chr4 (99-177)||(31044633-31044711)
chr4 (249-364)||(42995566-42995679)
chr4 (229-303)||(31042663-31042734)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 209 - 389
Target Start/End: Original strand, 48846135 - 48846312
Alignment:
Q  209 tcagttgggaccagatcattagctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaa 308  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  48846135 tcagttgggacccaatcattagctaaattctctgtatcctcatcaagcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaa 48846231  T
Q  309 catcattttcttcatggttttgatatcggcaccggcacggcaagtggcattgacaactttgtcatcttttttggcaacagc 389  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||| ||||| ||||    
T  48846232 catcattttcttcatggttttgatatcggcaccagcacggcgagcggcattgacaactttatcatcttttctggcagcagc 48846312  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 48845996 - 48846106
Alignment:
Q  99 ccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttgagcaagttgtgcctg 198  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48845996 ccaacttgccaattatcatctgatttggaatggctttccccgactcgtattctttgatcacttgaggcttctcattgataatttgagcaagttgtgcctg 48846095  T
Q  199 agtaagcttct 209  Q
    |||||||||||    
T  48846096 agtaagcttct 48846106  T

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Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 209 - 389
Target Start/End: Complemental strand, 7016383 - 7016206
Alignment:
Q  209 tcagttgggaccagatcattagctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaa 308  Q
    |||||||||||| |||||||| ||||||||||| |||   ||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  7016383 tcagttgggacctgatcattaactaaattctctatatattcatcaagcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaa 7016287  T
Q  309 catcattttcttcatggttttgatatcggcaccggcacggcaagtggcattgacaactttgtcatcttttttggcaacagc 389  Q
    |||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||||| ||||| ||||    
T  7016286 catcattttcttcatggttttgatatcggcaccggcaccgcgagcagcattgacaactttgtcatcttttctggcagcagc 7016206  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 7016529 - 7016419
Alignment:
Q  99 ccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttgagcaagttgtgcctg 198  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  7016529 ccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcctggatcacttgaggcttctcactgataatttgagcaagttgtgcctg 7016430  T
Q  199 agtaagcttct 209  Q
    |||||||||||    
T  7016429 agtaagcttct 7016419  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 17725705 - 17725790
Alignment:
Q  99 ccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttga 184  Q
    ||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17725705 ccaacttgccaattatatgctgatttggaatggctttccccgactcgtactcgtggatcacttgaggcttctcattgataatttga 17725790  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 35376358 - 35376439
Alignment:
Q  99 ccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataat 180  Q
    |||||||||||||||||   |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  35376358 ccaacttgccaattatctgctgatttggaatggctttccccgactcatactcctggataacttgaggcttctcattgataat 35376439  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 35378151 - 35378226
Alignment:
Q  229 agctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgca 307  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||   |||||||||||| ||||||||||||||||    
T  35378151 agctaaattctctgtatcctcatcaagcctcttagtgttcaatgaag---tgctgctagaggcagctttgtttgtcgca 35378226  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 35379684 - 35379753
Alignment:
Q  315 tttcttcatggttttgatatcggcaccggcacggcaagtggcattgacaactttgtcatcttttttggca 384  Q
    |||||||||||||| ||||||||| |||||||||| || ||| |||||| |||||||||| ||| |||||    
T  35379684 tttcttcatggtttcgatatcggctccggcacggcgagcggcgttgacagctttgtcatcctttctggca 35379753  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 27354341 - 27354444
Alignment:
Q  258 tcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccggcacggcaagtggc 356  Q
    |||||||||| ||||||||   | || |||||| |||||||| ||||||||||| || |||||||| |||||  ||||||||||||||||||| || |||    
T  27354341 tcttagtgtttaatgaagt---gttgttagaggcagctttgtctgtcgcaacattatgtttcttcacggtttcaatatcggcaccggcacggcgagcggc 27354437  T
Q  357 attgaca 363  Q
     ||||||    
T  27354438 gttgaca 27354444  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 35376532 - 35376560
Alignment:
Q  181 ttgagcaagttgtgcctgagtaagcttct 209  Q
    |||||||||||||||||||||||||||||    
T  35376532 ttgagcaagttgtgcctgagtaagcttct 35376560  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 31044711 - 31044633
Alignment:
Q  99 ccaacttgccaattatcatttgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgat 177  Q
    ||||||||| |||||||   || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  31044711 ccaacttgctaattatctgctggtttggaatggctttccctgactcatactcttggatcacttgaggcttctcattgat 31044633  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 364
Target Start/End: Original strand, 42995566 - 42995679
Alignment:
Q  249 catcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccggcacg 347  Q
    ||||||||||||||||||| ||||||||   ||||||||| | |||||||| ||||||| ||| || |||||||| ||||| ||||||||||||||||||    
T  42995566 catcaagcctcttagtgtttaatgaagt---gctgctagaagcagctttgtctgtcgcagcattatgtttcttcacggtttcgatatcggcaccggcacg 42995662  T
Q  348 gcaagtggcattgacaa 364  Q
    || || ||| |||||||    
T  42995663 gcgagcggcgttgacaa 42995679  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 31042734 - 31042663
Alignment:
Q  229 agctaaattctctgtatccacatcaagcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgt 303  Q
    ||||| |||||| |||||| | || |||||||||||||| |||||||   |||||||||| | ||||||||||||    
T  31042734 agctagattctcagtatcctcgtccagcctcttagtgttcaatgaag---tgctgctagatgcagctttgtttgt 31042663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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