View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0520_low_7 (Length: 389)
Name: NF0520_low_7
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0520_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 40 - 372
Target Start/End: Complemental strand, 17444251 - 17443917
Alignment:
| Q |
40 |
aaaattaacattcggtacacaaggtatttagggtttaaacccggcccctgcatatagcgcgtgtgtatgtgnnnnnnn--cttttaaattagtattagta |
137 |
Q |
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| T |
17444251 |
aaaattaacattcggtacacaaggtatttagggtttaaacccggcccctacatatcgcgcgtgtgtatgtgtttttttttctttttcattagtattagta |
17444152 |
T |
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| Q |
138 |
tgacaaacactacacttataattcctcccataatttcaacttgcagggtttcatgctcttttggaaattcaatagtcttcacaattgataatggagccaa |
237 |
Q |
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| T |
17444151 |
tgacaaacactacacttataattcctcccataatttcaacttgcagggttgcatgctcttttggaaattcaatagtcttcacaattgataatggagccaa |
17444052 |
T |
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| Q |
238 |
cccttactattttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgt |
337 |
Q |
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| T |
17444051 |
cccatactgttttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggcatccaatgtttcgt |
17443952 |
T |
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| Q |
338 |
tcttggggttcaagatgggcttttaacacaggttc |
372 |
Q |
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| T |
17443951 |
tcttggggttcaagatgggcttttaacacaggttc |
17443917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 372
Target Start/End: Complemental strand, 9628929 - 9628781
Alignment:
| Q |
224 |
gataatggagccaacccttactattttgcaacagaaatagaatatgaaaatggaaatggtgacctagttcaagttgaattgagccaatcaaacacatggc |
323 |
Q |
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|||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | || || ||||||| ||||||| | |||| |
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| T |
9628929 |
gatagtggagccaacccatactattttgctacagaaatagaatatgaaaatggagatggtgacattgtatctgtagaattgaatcaatcaagaagatgga |
9628830 |
T |
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| Q |
324 |
atccaatgtttcgttcttggggttcaagatgggcttttaacacaggttc |
372 |
Q |
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| T |
9628829 |
ttccaatgcaacgttcttggggtgcaagatgggctttgaactcaggttc |
9628781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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