View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0520_low_8 (Length: 374)
Name: NF0520_low_8
Description: NF0520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0520_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 363
Target Start/End: Complemental strand, 1503783 - 1503446
Alignment:
| Q |
30 |
agacatgtgataagttatagatatacatattcaaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaag |
129 |
Q |
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| T |
1503783 |
agacatgtgataagttatggatatacatattcgaaccgactttatatttttatcgttatatttaatgtgtgtaagtttcatcgccgtattctttcaaaag |
1503684 |
T |
|
| Q |
130 |
acattataaatataaagcattagacaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttnnnnnnnnccatacacatcaca |
229 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1503683 |
acattataaatgtaaagcattagagaaggcacctaaactagaaaagttagacacgtagagtagttcacggtttcacttaaaaaaaaccatacacatcaca |
1503584 |
T |
|
| Q |
230 |
caacacctcaaaccttactcnnnnnnncccatcttcttcctctttctatattatctctac----ctagctgcatttattttcactaaccccatgactcaa |
325 |
Q |
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||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1503583 |
caacacctcaaaccttaatctttttttcccaacttcttcctctttctatattatctctacctagctagctgcatttattttcactaaccccatgactcaa |
1503484 |
T |
|
| Q |
326 |
cacttttctatttaacccaactctcttttctcattcat |
363 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
1503483 |
cacttttctatttaacccaactcacttttctcattcat |
1503446 |
T |
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