View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0524_high_2 (Length: 443)
Name: NF0524_high_2
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 28397912 - 28397511
Alignment:
| Q |
13 |
gagacaaagttagcaaagatataataagatcaaattgacaattatcgttcttcagatgcattgctttatcaatggaaaatggctcatatcaatttagaaa |
112 |
Q |
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| T |
28397912 |
gagacaaatttagcaaagatataataagatcaaattgacaattatcgttcttcaggtgcattgctttatcaatggaaaatggctcatatcaatttagaaa |
28397813 |
T |
|
| Q |
113 |
aagccctagacaaaaaagaatcattttagcaagaaagagtagaaacaaatcggcgcgtacatggagatagaaacgccaaatactttcataaactagcaaa |
212 |
Q |
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| T |
28397812 |
aagccctagacaaaaaagaatcattctagcaagaaagagtcgaaacaaattggcgcgtacatggagatagaaacgccaaatactttcataaactagcaaa |
28397713 |
T |
|
| Q |
213 |
aatcaaatcaaagatggtgatgacatgattgtggaaccaaagcaaattgctaatcacatacaaaatcactttcttctaactttgcattcaaggttgatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
28397712 |
aatcaaatcaaagatggtgatgacatgattgtggatccaaagcaaattgctaatcacatacaaaataattttcttctaactttgcattcaaggttgatat |
28397613 |
T |
|
| Q |
313 |
atcaaaggcatttgaattctcttggttttaattacaagttctgtgattggatacaggtcattcttgaatgagcaaagctcttagtatcagttaatggtaa |
412 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28397612 |
atcaaaggcatttgaattcttttggttttaatgacaagttctgtgattggatacaggtcattcttgattgagcaaagctcttagtatcagttaatggtaa |
28397513 |
T |
|
| Q |
413 |
ac |
414 |
Q |
| |
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|| |
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| T |
28397512 |
ac |
28397511 |
T |
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