View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0524_high_3 (Length: 397)
Name: NF0524_high_3
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 35 - 387
Target Start/End: Complemental strand, 22364610 - 22364259
Alignment:
| Q |
35 |
aaacctcttattcatagttaagagtttgtttgaattgtgaaaatcttgaaacttatgtgtatttaaacaaacttatgaaggnnnnnnngttccaccccac |
134 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
22364610 |
aaacctctaattcatagttaagagtttgtttgaattgtgaaaatcttgaaacttatgtgtatctaaacaaacttatgaaggaaaaaaa-ttccaccccac |
22364512 |
T |
|
| Q |
135 |
gataatattcgatcatttacaatgtacaacactccattacataaaccggtcatgcaatattttgcatggggtccgtatttttattaagtgatcatgcaat |
234 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22364511 |
gataatattagatcatttacaatgtacaacactccattacataaaccgatcatgcaatagtttgcatggggtccgtatttttattaagtgatcatgcaat |
22364412 |
T |
|
| Q |
235 |
tgtatctcagctctaagacatactccttttcttttctttcttcaaaccgtaggtttcaattgtttggatggcttggaatgaataccatcattacaaacac |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364411 |
tgtatctcagctctaagacatactccttttcttttctttcttcaaactgtaggtttcaattgtttggatggcttggaatgaataccatcattacaaacac |
22364312 |
T |
|
| Q |
335 |
atttctcatgtatttctatattattcaaagaccatcatcatttatcccctatg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364311 |
atttctcatgtatttctatattattcaaagaccatcatcatttatcccctatg |
22364259 |
T |
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