View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0524_high_4 (Length: 348)
Name: NF0524_high_4
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 314855 - 315168
Alignment:
| Q |
30 |
gtcctcacaactaatcaattgtgaggacgagtaatatcataaactt-ctattcaaaacattaaccgattttcaagtttcggtccaccgtataccatgtaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
314855 |
gtcctcacaactaatcaattgtgaggacgagtaatatcataaactttctattcaaaacattaaccgattttcaagtttcgatccactgtataccatgtaa |
314954 |
T |
|
| Q |
129 |
gacacttcctcaaaccgcttaaacaataacatgcaacataaaaatggttatattgtaattagttttttattttgtacctaagttagctctgacaacttca |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
314955 |
gacacttcctcaaaccgcttaaacattaacatgcaacataaaaatggttatatagtaa--agttttttaattagtacctaggttagctctgacaacttca |
315052 |
T |
|
| Q |
229 |
gtgtaagtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaaga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
315053 |
gtgtaagtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaaagaaaatgcaaaga |
315152 |
T |
|
| Q |
329 |
gaactgcaggaccagc |
344 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
315153 |
gaactgcaggaccagc |
315168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 51719763 - 51719874
Alignment:
| Q |
235 |
gtgtagtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtgaaataggtaatgaatgaaaatgcaaagagaactg |
334 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| || || || || || |||| ||||||| |
|
|
| T |
51719763 |
gtgtaatttcttttgccatgaacagggtcaggtgaacgataagaatcagcaagaagagtggaagtgaaataagttataaaagagaaagcaagtagaactg |
51719862 |
T |
|
| Q |
335 |
caggaccagcaa |
346 |
Q |
| |
|
| || ||||||| |
|
|
| T |
51719863 |
ctgggccagcaa |
51719874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 51539048 - 51538988
Alignment:
| Q |
240 |
gtttctcttgccatgaacaggatcaggtgaacggtaacaatcagcaagaagagtggaagtg |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||| | |||||||||||||||||| | |||||| |
|
|
| T |
51539048 |
gtttctcttgccagtaacaggatcaggtgatctataacaatcagcaagaagatttgaagtg |
51538988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1182 times since January 2019
Visitors: 3642