View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0524_high_5 (Length: 305)

Name: NF0524_high_5
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0524_high_5
NF0524_high_5
[»] chr7 (2 HSPs)
chr7 (22-295)||(22636411-22636681)
chr7 (89-123)||(34399885-34399919)
[»] chr1 (4 HSPs)
chr1 (64-125)||(6427361-6427422)
chr1 (45-112)||(19637760-19637827)
chr1 (56-121)||(264607-264672)
chr1 (64-112)||(7988451-7988499)
[»] scaffold0022 (1 HSPs)
scaffold0022 (64-117)||(99904-99957)
[»] scaffold0020 (1 HSPs)
scaffold0020 (64-121)||(137791-137848)
[»] chr5 (2 HSPs)
chr5 (64-113)||(28296339-28296388)
chr5 (64-116)||(38749559-38749611)
[»] chr3 (2 HSPs)
chr3 (64-117)||(11093581-11093634)
chr3 (64-121)||(16789023-16789080)
[»] chr2 (1 HSPs)
chr2 (51-112)||(31026693-31026754)
[»] chr6 (1 HSPs)
chr6 (64-116)||(9024172-9024224)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 22636411 - 22636681
Alignment:
Q  22 atatggacaccagatacaacactgacacatcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 121  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||| |  ||||  ||||||||  ||||||||| |||||||||||||||||| ||||    
T  22636411 atatggacaccagacacaacactgacacatcgacaccataattaattgat-aaaacaaaataattgaatgtaatcaaatgtgttggtgtcgtgtcggtgt 22636509  T
Q  122 tggagactggtacctgtgtccgatactggacacacttttaatctaatttgttggtactacatacctttagctacacagttgtggagaggacctggaaggc 221  Q
    |||||||||| ||||||  | ||||||||||||||||||||||| |||| | |||||||| |||||||||||  |||||||||||||||||||||||| |    
T  22636510 tggagactgggacctgt--cggatactggacacacttttaatctgatttttcggtactacttacctttagctgaacagttgtggagaggacctggaagac 22636607  T
Q  222 cattgatggtatgagcatctgaggtattcggtgctaaccctgtttgtgttgcttgatttataactgcttctgtg 295  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22636608 cattgatggtgtgagcatctgaggtattaggtgctaaccctgtttgtgttgcttgatttataactgcttctgtg 22636681  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 34399919 - 34399885
Alignment:
Q  89 atgtaatcatatgtgttggtgtcgtgtcagtgttg 123  Q
    |||||||||||||||| ||||||||||||||||||    
T  34399919 atgtaatcatatgtgtgggtgtcgtgtcagtgttg 34399885  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 6427361 - 6427422
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgttgga 125  Q
    |||||| | ||||| | ||||||| ||||||| |||||||||||||||||||||| ||||||    
T  6427361 taatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttgga 6427422  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 19637760 - 19637827
Alignment:
Q  45 gacacatcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 112  Q
    |||||||||| ||| | | |||||||| ||||||| || |||| |||||||||||||||| |||||||    
T  19637760 gacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 264607 - 264672
Alignment:
Q  56 accaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 121  Q
    ||||| |||||||||| ||| | | ||| ||  ||||||||| |||||||||||||||||||||||    
T  264607 accaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgt 264672  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 7988499 - 7988451
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 112  Q
    |||||||| ||| ||| ||||||| ||||||||||| ||||||||||||    
T  7988499 taatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcg 7988451  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 99904 - 99957
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtca 117  Q
    |||||| | ||||| | ||||||| ||||||| |||||||||||||||||||||    
T  99904 taattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtca 99957  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 137791 - 137848
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 121  Q
    |||||||| ||||| | | |||||  |||| |||||||||||||||||||||||||||    
T  137791 taatttaagaaaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtcagtgt 137848  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 28296339 - 28296388
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgt 113  Q
    |||||| | ||||||| ||||||| ||||| |||||||||||||||||||    
T  28296339 taatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 38749611 - 38749559
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtc 116  Q
    |||||| | ||||||| ||||||| ||||||| |||||||||||||| |||||    
T  38749611 taatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 11093581 - 11093634
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtca 117  Q
    |||||| | ||||||| ||||||| | ||||||| |||||||||||||||||||    
T  11093581 taatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgtca 11093634  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 16789023 - 16789080
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 121  Q
    |||||||| ||||| | |||||||  |||||| ||| |||||||||||||||||||||    
T  16789023 taatttaaaaaaatcatataattcagtgtaattataagtgttggtgtcgtgtcagtgt 16789080  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 31026693 - 31026754
Alignment:
Q  51 tcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 112  Q
    |||||||| | | |||||||| ||||||| ||||||| |||||||||||| ||| |||||||    
T  31026693 tcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 9024224 - 9024172
Alignment:
Q  64 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtc 116  Q
    |||||| | ||||||| ||||||| ||||||||||||||||  ||||||||||    
T  9024224 taatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtc 9024172  T

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