View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0524_high_7 (Length: 271)
Name: NF0524_high_7
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7656616 - 7656834
Alignment:
| Q |
20 |
gacatcatcatttgcattatcctcagatatatcagtatggaatgcacttctttttgaaattgtgatgacatttggattggtatacacagtttatgcaacc |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7656616 |
gacatcagcatttgcattatcctcagatatatcagtatggaatgcacttctttttgaaattgtgatgacatttggattggtatacacagtttatgcaaca |
7656715 |
T |
|
| Q |
120 |
gcagtagatccnnnnnnngggaatgtaggaattattgctccaattgcaattggtatcattgttggtgcaaatatcttagctggtggagcatttgatggtg |
219 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7656716 |
gcagtagatccaaaaaaagggaatataggaattattgctccaattgcaattggtgttattgttggtgcaaatatcttagctggtggagcatttgatggtg |
7656815 |
T |
|
| Q |
220 |
catccatgaatccagctgt |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7656816 |
catccatgaatccagctgt |
7656834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 23340264 - 23340447
Alignment:
| Q |
60 |
aatgcacttctttttgaaattgtgatgacatttggattggtatacacagtttatgcaaccgcagtagatccnnnnnnngggaatgtaggaattattgctc |
159 |
Q |
| |
|
||||||||| | ||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||| || || | |||||| ||||||| |
|
|
| T |
23340264 |
aatgcacttgtgtttgagattgtgatgacttttggtttggtttacacagtgtatgctactgcagtagacccaaaaaatggtagcctaggaacaattgctc |
23340363 |
T |
|
| Q |
160 |
caattgcaattggtatcattgttggtgcaaatatcttagctggtggagcatttgatggtgcatccatgaatccagctgtttctt |
243 |
Q |
| |
|
|||||||||||||| |||| ||||| || || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
23340364 |
caattgcaattggtttcatagttggagctaacatcttagcaggtggtgcatttgatggtgcatccatgaacccagcagtttctt |
23340447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 52102473 - 52102287
Alignment:
| Q |
57 |
tggaatgcacttctttttgaaattgtgatgacatttggattggtatacacagtttatgcaaccgcagtagatccnnnnnnngggaatgtaggaattattg |
156 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| |||| || |||||||| || || | | |
|
|
| T |
52102473 |
tggaatgcattagtttttgagattgtgatgacatttggattagtatatacagtttatgcaacagcaatagacccaaagagagggaatgttggtgttgtag |
52102374 |
T |
|
| Q |
157 |
ctccaattgcaattggtatcattgttggtgcaaatatcttagctggtggagcatttgatggtgcatccatgaatccagctgtttctt |
243 |
Q |
| |
|
| ||| | ||||||||| ||||| |||||||||||||| | |||||| | |||||||||||||| ||||| |||||||| |||| |
|
|
| T |
52102373 |
caccattagcaattggttgtattgtgggtgcaaatatcttggttggtggtgtttttgatggtgcatcaatgaacccagctgtgtctt |
52102287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 24833931 - 24833995
Alignment:
| Q |
165 |
gcaattggtatcattgttggtgcaaatatcttagctggtggagcatttgatggtgcatccatgaa |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||| | | |||||| |||||||||| |||| |||||| |
|
|
| T |
24833931 |
gcaattggactcattgttggtgcaaatatccttgttggtggtccatttgatggagcatgcatgaa |
24833995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 43585611 - 43585659
Alignment:
| Q |
153 |
attgctccaattgcaattggtatcattgttggtgcaaatatcttagctg |
201 |
Q |
| |
|
||||| |||||||| |||||| | ||||||||||| ||||||||||||| |
|
|
| T |
43585611 |
attgcaccaattgctattggtttgattgttggtgccaatatcttagctg |
43585659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 58 times since January 2019
Visitors: 3646