View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0524_low_12 (Length: 246)
Name: NF0524_low_12
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 26155351 - 26155524
Alignment:
| Q |
1 |
ctaccatccccacattgtaaaggatatctgagtaatagagggtccttcacctctcaatcttcaatataatccnnnnnnntgtttgattgccataatttat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
26155351 |
ctaccatctccacattgtaaaggatatctgagtaatagagggtccttcacctcccaatcttcaatataatccaaaaaaatgtttgattgccataatttat |
26155450 |
T |
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| Q |
101 |
aacgaaatatttaatataaagtaacgaattattatttatgttgaacagcaaagtccagctacaacaactataac |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155451 |
aacgaaatatttaatataaagtaacgaattattatttatgttgaacagcaaagtccagctacaacaactataac |
26155524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 26168649 - 26168822
Alignment:
| Q |
1 |
ctaccatccccacattgtaaaggatatctgagtaatagagggtccttcacctctcaatcttcaatataatccnnnnnnntgtttgattgccataatttat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
26168649 |
ctaccatctccacattgtaaaggatatctgagtaatagagggtccttcacctcccaatcttcaatataatccaaaaaaatgtttgattgccataatttat |
26168748 |
T |
|
| Q |
101 |
aacgaaatatttaatataaagtaacgaattattatttatgttgaacagcaaagtccagctacaacaactataac |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26168749 |
aacgaaatatttaatataaagtaacgaattattatttatgttgaacagcaaagtccagctacaacaactataac |
26168822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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