View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0524_low_13 (Length: 228)
Name: NF0524_low_13
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0524_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 14288344 - 14288552
Alignment:
| Q |
14 |
ccgactcggtcgccgacaccgacgatatagctcagccgctcttccgctttctcgccaactacattgcaactaaaaccactcccctctctcaagtcgagat |
113 |
Q |
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| T |
14288344 |
ccgactctgtcgccgacaccgacgatatagctcagtcgctcttccgctttctcgccaactacattgcaactaaaaccacttccctctctcaagtcgagat |
14288443 |
T |
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| Q |
114 |
agctcgcctctccacctccgagataactcgcctcatctctaacctctccgaaaccgatataaaccgcctcttcaatgccggcatttctgaatttgtcgac |
213 |
Q |
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| T |
14288444 |
agctcgcctctctacctccgagataactcgcctcatctctaacctctccgaaaccgatatcaaccgcctcttcaatgccggcatttctgaatttgtcgac |
14288543 |
T |
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| Q |
214 |
ggtatcttc |
222 |
Q |
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||||||||| |
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| T |
14288544 |
ggtatcttc |
14288552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 14281192 - 14281319
Alignment:
| Q |
26 |
ccgacaccgacgatatagctcagccgctcttccgctttctcgccaactacattgcaactaaaaccactcccctctctcaagtcgagatagctcgcctctc |
125 |
Q |
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||||| ||||| | ||| |||| || |||| ||| || ||||||||||||||||| || |||||| || ||||| | |||||||||||||||||||| | |
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| T |
14281192 |
ccgaccccgacaaaataactcacccactctaccgtttcctcgccaactacattgctacaaaaacctcttccctcaccgaagtcgagatagctcgcctcac |
14281291 |
T |
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| Q |
126 |
cacctccgagataactcgcctcatctct |
153 |
Q |
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|||| ||||||||| | |||||||||| |
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| T |
14281292 |
caccgccgagataaataacctcatctct |
14281319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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