View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0524_low_4 (Length: 439)

Name: NF0524_low_4
Description: NF0524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0524_low_4
NF0524_low_4
[»] chr4 (12 HSPs)
chr4 (20-434)||(12451508-12451921)
chr4 (57-270)||(9251554-9251767)
chr4 (38-258)||(10115474-10115692)
chr4 (65-268)||(9197983-9198186)
chr4 (81-268)||(9269364-9269552)
chr4 (20-207)||(16570367-16570550)
chr4 (254-434)||(17959001-17959180)
chr4 (57-207)||(18420020-18420170)
chr4 (65-213)||(9220761-9220907)
chr4 (172-426)||(18173749-18174003)
chr4 (75-207)||(11775233-11775365)
chr4 (319-390)||(16570821-16570892)
[»] scaffold0282 (1 HSPs)
scaffold0282 (31-432)||(19774-20172)
[»] chr2 (11 HSPs)
chr2 (20-388)||(21653276-21653642)
chr2 (57-268)||(23153909-23154120)
chr2 (57-268)||(23565166-23565377)
chr2 (66-207)||(17739946-17740086)
chr2 (260-376)||(17740682-17740798)
chr2 (60-207)||(34897843-34897990)
chr2 (119-269)||(34135355-34135506)
chr2 (118-255)||(24301937-24302075)
chr2 (172-268)||(18331449-18331545)
chr2 (32-68)||(24280629-24280665)
chr2 (382-426)||(34897621-34897665)
[»] chr1 (2 HSPs)
chr1 (59-412)||(9167059-9167416)
chr1 (169-411)||(20407138-20407385)
[»] scaffold1114 (1 HSPs)
scaffold1114 (57-373)||(193-508)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-363)||(100472-100825)
[»] chr6 (19 HSPs)
chr6 (20-278)||(12465492-12465748)
chr6 (113-369)||(14353280-14353537)
chr6 (57-232)||(12486682-12486858)
chr6 (171-432)||(20109904-20110166)
chr6 (65-236)||(9520630-9520801)
chr6 (143-314)||(23295183-23295357)
chr6 (92-376)||(23298637-23298921)
chr6 (169-368)||(14985482-14985682)
chr6 (31-206)||(23089879-23090052)
chr6 (60-226)||(14797284-14797451)
chr6 (253-376)||(19977864-19977988)
chr6 (57-240)||(22544776-22544960)
chr6 (114-269)||(17913352-17913523)
chr6 (57-162)||(22523925-22524029)
chr6 (211-268)||(21746615-21746672)
chr6 (72-148)||(14985397-14985473)
chr6 (169-207)||(14874659-14874697)
chr6 (144-228)||(14567603-14567688)
chr6 (20-63)||(23298555-23298599)
[»] chr5 (2 HSPs)
chr5 (31-412)||(24193096-24193474)
chr5 (57-268)||(17363101-17363312)
[»] scaffold0007 (2 HSPs)
scaffold0007 (118-412)||(208436-208731)
scaffold0007 (169-404)||(211551-211787)
[»] chr8 (12 HSPs)
chr8 (40-267)||(17508485-17508710)
chr8 (31-268)||(25262180-25262422)
chr8 (242-372)||(21686909-21687039)
chr8 (242-372)||(21691233-21691363)
chr8 (110-264)||(24401185-24401340)
chr8 (149-236)||(21684776-21684863)
chr8 (149-236)||(21689125-21689212)
chr8 (347-434)||(12517601-12517686)
chr8 (349-432)||(24401426-24401508)
chr8 (71-119)||(21684711-21684759)
chr8 (71-119)||(21689060-21689108)
chr8 (316-432)||(25262471-25262586)
[»] scaffold2017 (1 HSPs)
scaffold2017 (134-412)||(639-917)
[»] chr7 (15 HSPs)
chr7 (74-268)||(20147563-20147755)
chr7 (57-268)||(6461005-6461216)
chr7 (20-268)||(16195992-16196239)
chr7 (136-296)||(17162135-17162296)
chr7 (31-161)||(14973780-14973906)
chr7 (31-161)||(15403256-15403382)
chr7 (126-268)||(13488251-13488394)
chr7 (114-207)||(11775050-11775143)
chr7 (169-268)||(14266882-14266982)
chr7 (122-207)||(16093850-16093935)
chr7 (218-268)||(17492374-17492424)
chr7 (218-268)||(17560790-17560840)
chr7 (114-207)||(15010168-15010261)
chr7 (317-412)||(11774844-11774939)
chr7 (76-162)||(20911616-20911701)
[»] scaffold0111 (1 HSPs)
scaffold0111 (57-296)||(31193-31433)
[»] scaffold0417 (1 HSPs)
scaffold0417 (53-268)||(2557-2772)
[»] chr3 (15 HSPs)
chr3 (60-189)||(38277993-38278122)
chr3 (82-201)||(9637227-9637346)
chr3 (273-391)||(12805100-12805219)
chr3 (76-187)||(17385767-17385878)
chr3 (218-268)||(14305960-14306010)
chr3 (92-184)||(2547600-2547692)
chr3 (118-194)||(12794318-12794394)
chr3 (20-63)||(25486672-25486716)
chr3 (106-229)||(29650502-29650625)
chr3 (170-228)||(10711169-10711228)
chr3 (172-271)||(14262851-14262950)
chr3 (170-212)||(2279290-2279332)
chr3 (218-268)||(8900452-8900502)
chr3 (92-182)||(16219970-16220060)
chr3 (31-63)||(5346209-5346241)
[»] scaffold0959 (1 HSPs)
scaffold0959 (117-268)||(740-892)
[»] scaffold0126 (1 HSPs)
scaffold0126 (177-265)||(16342-16431)
[»] scaffold0135 (1 HSPs)
scaffold0135 (65-213)||(31412-31558)
[»] scaffold0115 (2 HSPs)
scaffold0115 (175-268)||(40620-40714)
scaffold0115 (57-193)||(40717-40853)
[»] scaffold0018 (4 HSPs)
scaffold0018 (57-264)||(53506-53711)
scaffold0018 (57-264)||(57458-57663)
scaffold0018 (299-376)||(53717-53794)
scaffold0018 (299-376)||(57669-57746)
[»] scaffold0171 (1 HSPs)
scaffold0171 (172-268)||(3664-3759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (38-162)||(75897-76018)
[»] scaffold0040 (1 HSPs)
scaffold0040 (75-183)||(48442-48550)
[»] scaffold1924 (1 HSPs)
scaffold1924 (218-268)||(311-361)
[»] scaffold0333 (1 HSPs)
scaffold0333 (116-158)||(1175-1217)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 12451921 - 12451508
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12451921 catcatcaattcatcaagttaaaatcaccaaagaatcatcatcagtaacaacaatcacctcaaagaaacaacaaagtttcaaa-ttacatttcacataaa 12451823  T
Q  120 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12451822 agacggacaactatccacatcacgacattcatcatattaaacatccaatcaacattgattcattcttattctatcatattatcatgaacataaaccaatt 12451723  T
Q  220 gcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgtt 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12451722 gcaagttatccgctcataaaatcacattttgacaaagtttgtctatttttacaactttctacattttccaagtaatttgacaaaacaatgtaaacgtgtt 12451623  T
Q  320 caaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcc 419  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12451622 caaataccccaacctagtacatacgctactcacatatgatcacagtagcatatgcatgtaagcatcataggtcactttcgattaattccaaaaattcgcc 12451523  T
Q  420 taagttcatctcact 434  Q
    |||||||||||||||    
T  12451522 taagttcatctcact 12451508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 9251554 - 9251767
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||||||| || |||||| |||||||||| |||| | ||| ||  || ||||||||||||| ||||||||||| ||||||||||| ||    
T  9251554 atcatcatcaacaacaatcaact-aaagaatcaacaaagttacaaactcacattttgcacaaaagacggacaattatccacatcaagacattcatcaaat 9251652  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    |||||| | | ||| | |||||||||||||||| ||  |||| |||||||| |||||  |||||||||||||||||||||||||| | |||||  |||||    
T  9251653 taaacacggactcatccttgattcattcttattataaaatatcatcatgaatataaagtcaattgcaagttatccggtcataaaacctcatttcaacaaa 9251752  T
Q  256 gtttgtctattttta 270  Q
    ||| |||||||||||    
T  9251753 gttcgtctattttta 9251767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 10115692 - 10115474
Alignment:
Q  38 ttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccac 137  Q
    ||||||||||||||| |  ||||||| ||||||  |||||||||||||||||| || |||||||| | ||| ||  |||||||| |  |||||||  |||    
T  10115692 ttaaaatcaccaaagga--atcatcatcaacaattatcacctcaaagaaacaataacgtttcaaaatcacattttgcataaaag-cacacaactaatcac 10115596  T
Q  138 atcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 236  Q
    |||| ||||||||| ||||||||||  ||| || || |||||||||||||||||||| ||||||| |||| | ||| ||| |||| ||||||||| ||||    
T  10115595 atcatgacattcataatattaaacacccaaccatcaatgattcattcttattctatcctattatcgtgaatacaaagccatttgcgagttatccgatcat 10115496  T
Q  237 aaaatcacattttgacaaagtt 258  Q
    |||||| |||||||||||||||    
T  10115495 aaaatctcattttgacaaagtt 10115474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 9197983 - 9198186
Alignment:
Q  65 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 164  Q
    |||||||||||| || || ||| |||||||||| |||| | ||| ||  || |||||||| | || ||||||||||| ||||||||||| ||||||||      
T  9197983 caacaacaatcaactgaa-gaaccaacaaagttccaaaatcacattttgcacaaaagacgaaaaattatccacatcatgacattcatcaaattaaacacc 9198081  T
Q  165 caatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtct 263  Q
    || |||   | |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| |||||||| | |||||  ||||||||  |||    
T  9198082 cactcattgtggattcattcttattatatcatatcatcatgaatataaagccaattgcaagttatccgatcataaaacctcatttcaacaaagttcatct 9198181  T
Q  264 atttt 268  Q
    |||||    
T  9198182 atttt 9198186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 9269364 - 9269552
Alignment:
Q  81 aaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattc 180  Q
    |||||| |||| |||||||||| | ||| ||  || ||||||| ||||  ||||||||||| ||||||||||| ||||||||   | ||| | |||||||    
T  9269364 aaagaatcaactaagtttcaaactcacattttgcacaaaagacagacagttatccacatcatgacattcatcaaattaaacaccgactcatccttgattc 9269463  T
Q  181 attcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||| ||  |||| |||||||| |||||  |||||||||||||| ||||||||||| | |||||  |||||||| |||||||||    
T  9269464 attcttattataaaatatcatcatgaatataaagtcaattgcaagttattcggtcataaaacctcatttcaacaaagttcgtctatttt 9269552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 16570367 - 16570550
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    ||||| ||| || |||| ||||||||||||||||||||||||     ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||    
T  16570367 catcaccaaaccttcaaattaaaatcaccaaagaatcatcattg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aa 16570462  T
Q  120 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    |||| |||| ||| |||||||| ||||||||||||||| ||||  || |||  ||  ||||||||  ||||||||||| || ||||||    
T  16570463 agactgacatctaaccacatcatgacattcatcatattgaacacccagtcattatcaattcattcacattctatcatactaacatgaa 16570550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 434
Target Start/End: Original strand, 17959001 - 17959180
Alignment:
Q  254 aagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcaca 353  Q
    ||||| ||||||||| || ||||||  ||||||| ||||||||||||||||||| ||| || |||||||| ||| |||| ||| | || | || |||  |    
T  17959001 aagttcgtctattttaacaactttcatcattttctaagtaatttgacaaaacaaagtatacatgttcaaagacctcaacaaagcatatccactgctcgga 17959100  T
Q  354 tatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctcact 434  Q
    ||||||||||||||||||||||| ||  ||||||||| || || | ||||||| ||||| ||   ||||||||||||||||    
T  17959101 tatgatcacagtagcatatgcatatacgcatcataggccaattcccattaatt-caaaattttctctaagttcatctcact 17959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 18420170 - 18420020
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||||||| ||||||| || ||||||| |  |||| ||| | ||  ||  |||||||||||||||| || ||||||||  ||||| |||| ||    
T  18420170 atcatcatcaacaactatcaccttaaggaaacaatatcgttttaaaatcacgttttgcataaaagacggacaattaaccacatcataacatttatcaaat 18420071  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    ||||||  |||||| ||||||||||||||||||||||| ||| ||||||||    
T  18420070 taaacacccaatcatcattgattcattcttattctatcttatcatcatgaa 18420020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 9220761 - 9220907
Alignment:
Q  65 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 164  Q
    |||||||||||| ||||| ||| |||||||||| |||| | ||| ||  |||||||||||||||| |||| |||||| ||||||||||| |||||||       
T  9220761 caacaacaatcaactcaa-gaaccaacaaagttccaaaatcacatttg-cataaaagacggacaattatctacatcatgacattcatcaaattaaacgac 9220858  T
Q  165 caatcaacattgattcattcttattctatcatattatcatgaacataaa 213  Q
    || ||| | | |||||||||| ||| |||||||| |||||||| |||||    
T  9220859 cactcatcgtggattcattctaattttatcatatcatcatgaatataaa 9220907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 426
Target Start/End: Original strand, 18173749 - 18174003
Alignment:
Q  172 cattgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttta 270  Q
    ||||||||||||||| ||| ||||||| |||||||| | |||  |||||  |||| || |   |||||||   |||||| |||||||| |||||||||      
T  18173749 cattgattcattctttttccatcatatcatcatgaataaaaagtcaattataagtcattcaaccataaaacaccatttttacaaagttcgtctattttct 18173848  T
Q  271 ctactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcat 370  Q
      |||||| | |||||| ||||||||  |||||| || |||||| | |||||| ||| |||| ||| | |||  ||||||||||||||||||| ||||||    
T  18173849 taactttcaatattttctaagtaattcaacaaaataaggtaaacatattcaaacacctcaacaaagcatatatactactcacatatgatcacaatagcat 18173948  T
Q  371 atgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttc 426  Q
     ||||| ||  ||||||||| || || | | ||||||| ||||||| |||||||||    
T  18173949 ctgcatatacgcatcataggccaattccaactaattcc-aaaattcacctaagttc 18174003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 11775233 - 11775365
Alignment:
Q  75 cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacat 174  Q
    ||||||||||||||   ||||||||||| | | | ||||| |||||||||||||  ||||||| | | || |||||||||||||||||  |||||  |||    
T  11775233 cacctcaaagaaacggtaaagtttcaaattcatatttcacctaaaagacggacatttatccacgttatgatattcatcatattaaacacccaatcctcat 11775332  T
Q  175 tgattcattcttattctatcatattatcatgaa 207  Q
      ||||||||  |||||||||||||| ||||||    
T  11775333 ctattcattcacattctatcatattaacatgaa 11775365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 16570821 - 16570892
Alignment:
Q  319 tcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcatagg 390  Q
    ||||| ||| |||||||  | |||| ||||||||||||||||||| |||||||||||| ||  |||||||||    
T  16570821 tcaaacacctcaaccaaacatatacactactcacatatgatcacaatagcatatgcatataggcatcatagg 16570892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 432
Target Start/End: Complemental strand, 20172 - 19774
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 130  Q
    |||||| |||||||||||||||| ||||| |||   ||||  |||||||||||||||||||||||||||||| | ||| ||  ||||||||| ||||| |    
T  20172 catcaaattaaaatcaccaaagagtcatcgtca---acaattatcacctcaaagaaacaacaaagtttcaaaatcacattttgcataaaagatggacatc 20076  T
Q  131 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca-taaaccaattgcaagttatc 229  Q
    || |||||||| |||||||| |||||||||||  |||||| | ||||||||||||||||||||||||| ||||| | ||  || | ||||||||||||||    
T  20075 taaccacatcatgacattcaacatattaaacacccaatcatctttgattcattcttattctatcatatcatcataagcacgaagctaattgcaagttatc 19976  T
Q  230 cggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaatacccc 329  Q
    ||||||| |||||||||||| |||| ||| ||||||||| |  |||||   ||||||| ||||||||   |||||||| |||||| |||||||  ||| |    
T  19975 cggtcatgaaatcacattttaacaaggttcgtctattttcaaaacttttatcattttctaagtaattccccaaaacaaggtaaacatgttcaaccacctc 19876  T
Q  330 aaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatc 429  Q
    ||||||| | |||| ||||||| ||||||||||| |||||||||||| ||| ||||||| | || ||   ||||||||| ||||||| ||||||||| ||    
T  19875 aaccaagcatatacactactcatatatgatcacactagcatatgcatataagcatcatatgccaattctaattaattcc-aaaattcacctaagttcgtc 19777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 21653276 - 21653642
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||| |||||| |||||||||||||||||| |||||||   | ||| ||||| |||| |||||| ||   ||| | | | ||| || |||||||    
T  21653276 catcatcaattcatcaaattaaaatcaccaaagaataatcatca---ataactatcacttcaaggaaacatcaccttttaacaatcacattttacataaa 21653372  T
Q  120 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaat 218  Q
    |||  |||||||| |||||| | | |||||||||| ||  ||| ||||||  |||||| ||| |||||||||||||| ||||||||||  |||| ||| |    
T  21653373 agaaagacaactaaccacattatgtcattcatcatttttgacacgcaatcttcattgactcaatcttattctatcatgttatcatgaaggtaaaaccatt 21653472  T
Q  219 tgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgt 318  Q
    |||||||||||||||||| ||| |||||||| |||| ||| ||||||||| ||  |||||||||||||| ||||||||  ||||||||| |||||| ||     
T  21653473 tgcaagttatccggtcatgaaaccacattttaacaacgttcgtctattttcaccgctttctacattttctaagtaattccacaaaacaaggtaaacatgg 21653572  T
Q  319 tcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcata 388  Q
    ||||| || ||||||||| | |||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  21653573 tcaaacactccaaccaagcatatacactactcacatatgatcacagtagcatatgcatataagcatcata 21653642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 23154120 - 23153909
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  || ||| |||||||||||| |||||||| | ||||||||||||    
T  23154120 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatat 23154022  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    ||||||  ||||||  |||||||||||||||||||||| |||||| ||||  | ||| ||| |||||||||||||| |||||||| | |||||||| |||    
T  23154021 taaacacccaatcataattgattcattcttattctatcctattattatgattacaaagccatttgcaagttatccgatcataaaacctcattttgataaa 23153922  T
Q  256 gtttgtctatttt 268  Q
    ||| |||||||||    
T  23153921 gttcgtctatttt 23153909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 23565377 - 23565166
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  || ||| |||||||||||| |||||||| | ||||||||||||    
T  23565377 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatat 23565279  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    ||||||  ||||||  |||||||||||||||||||||| |||||| ||||  | ||| ||| |||||||||||||| |||||||| | |||||||| |||    
T  23565278 taaacacccaatcataattgattcattcttattctatcctattattatgattacaaagccatttgcaagttatccgatcataaaacctcattttgataaa 23565179  T
Q  256 gtttgtctatttt 268  Q
    ||| |||||||||    
T  23565178 gttcgtctatttt 23565166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 17739946 - 17740086
Alignment:
Q  66 aacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgc 165  Q
    ||||||||||| |||||  || ||||||||||||||| | ||| ||  ||||||||||||| ||||||||| |||| |||||||| |||||||||||  |    
T  17739946 aacaacaatcaactcaat-aatcaacaaagtttcaaaatcacattttgcataaaagacggataactatccatatcatgacattcaacatattaaacactc 17740044  T
Q  166 aatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  17740045 aatcatcattgattcattcttattctatcatatcatcatgaa 17740086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 17740682 - 17740798
Alignment:
Q  260 gtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgat 359  Q
    ||||||||| || ||||| ||||||||| |||||||||||||||||||  ||||| |||||||| ||| |||||||| |||||| |||||||||||| ||    
T  17740682 gtctattttcaccactttttacattttctaagtaatttgacaaaacaagttaaacatgttcaaacacctcaaccaagcacatacactactcacatattat 17740781  T
Q  360 cacagtagcatatgcat 376  Q
    |||||||||||||||||    
T  17740782 cacagtagcatatgcat 17740798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 34897990 - 34897843
Alignment:
Q  60 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaa 159  Q
    |||| ||| |||||||||||||||||||| |||||||||| || | ||| ||||  |||||||| ||||||||||||||| | ||| |||||||||||||    
T  34897990 atcaccaataacaatcacctcaaagaaacgacaaagtttcgaaatcacatttcatgtaaaagacagacaactatccacattaagacgttcatcatattaa 34897891  T
Q  160 acatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    |||  |||||| ||| ||||||| ||||||||||||||| | ||||||    
T  34897890 acactcaatcatcatcgattcatccttattctatcatataaacatgaa 34897843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 34135506 - 34135355
Alignment:
Q  119 aagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaa 217  Q
    ||||||||||||||  |||| || || || ||||||||||||||  || ||   |||||||||| |||| | ||| |||| |||||||||||||| ||||    
T  34135506 aagacggacaactaatcacaccatgatatgcatcatattaaacacccagtccttattgattcatccttagtttattatatcatcatgaacataaagccaa 34135407  T
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 269  Q
    ||||||||||| | ||||| ||| |||||||| || ||||| ||||||||||    
T  34135406 ttgcaagttattctgtcatgaaaccacattttaactaagttcgtctattttt 34135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 24301937 - 24302075
Alignment:
Q  118 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaacca 216  Q
    |||| ||||||| ||||||||| | |||||||| || ||| ||||| ||| |||||| |||||||||||||| |||| ||| ||    | ||| || | |    
T  24301937 aaagtcggacaattatccacattatgacattcaccaaattcaacatccaagcaacatagattcattcttattatatcctatcatttcaagcatgaagcta 24302036  T
Q  217 attgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    |||||||| |||||||||| |||| |||||||| |||||    
T  24302037 attgcaagctatccggtcacaaaaccacattttaacaaa 24302075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 18331545 - 18331449
Alignment:
Q  172 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||| |||||||||||| |||||| ||  || ||| | ||| || ||||||||||| || |||||||| | ||||||||  ||||| |||||||||    
T  18331545 cattgtttcattcttattttatcatgttcccaagaatacaaatcatttgcaagttattcgatcataaaacctcattttgaacaagttcgtctatttt 18331449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 24280629 - 24280665
Alignment:
Q  32 atcaagttaaaatcaccaaagaatcatcatcagcaac 68  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  24280629 atcaatttaaaatcaccaaagaatcatcatcaacaac 24280665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 34897665 - 34897621
Alignment:
Q  382 catcataggtcactttcgattaattccaaaaattcgcctaagttc 426  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||    
T  34897665 catcataggtcaattatgattaattccgaaaattcgcctaagttc 34897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 59 - 412
Target Start/End: Complemental strand, 9167416 - 9167059
Alignment:
Q  59 catcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatatta 158  Q
    ||||| ||| ||||||||||  |||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||  ||||| ||||||||||||||||    
T  9167416 catcatcaataacaatcaccctaaagaaacgacaaagtttcaaaatcacatttcatataaaagacggacaactatctgcatcatgacattcatcatatta 9167317  T
Q  159 aacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtc---ataaaatcacattttgacaa 254  Q
    ||||  |||||||| |||||||||||||||| || ||||| ||||| || || ||||||||| |||||| ||||| |   || ||| |||||||| ||||    
T  9167316 aacactcaatcaactttgattcattcttattttaccatatcatcattaatataaaaccaattacaagttctccggccaatatgaaaccacattttaacaa 9167217  T
Q  255 agtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacat 354  Q
    | ||  |||||||| || ||||||||||||||| ||| ||||  |||||| || |||||| ||||| || ||| |||| ||| | |||| ||||||||||    
T  9167216 acttcctctattttcacaactttctacattttctaagcaattcaacaaaaaaaggtaaacatgttctaacacctcaacaaagcatatacactactcacat 9167117  T
Q  355 atgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 412  Q
    || ||| || |||||||||||| ||| ||||||||| || || | || ||||||||||    
T  9167116 attatcgcaatagcatatgcatataagcatcataggacaattcctataaattccaaaa 9167059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 169 - 411
Target Start/End: Original strand, 20407138 - 20407385
Alignment:
Q  169 caacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 267  Q
    ||||||||||||||||||||| |||||  |||||||| |||| |||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||    
T  20407138 caacattgattcattcttattatatcaccttatcatgcacatcaaaccaattgtaagttatccggtcaagaaatcacattttaacaaaattcgtctattt 20407237  T
Q  268 ttactactttctacattttccaagtaatttgacaaaacaatgtaa----acgtgttcaaataccccaaccaagtacatacgctactcacatatgatcaca 363  Q
      |  ||||||||||||||| ||| ||||| ||||||||| || |    | ||| ||||| ||| |||||||| | |||| |||||||||||||||| ||    
T  20407238 ccagaactttctacattttctaagaaatttaacaaaacaaggtcaatgcatgtgatcaaacacctcaaccaagcatatacactactcacatatgatccca 20407337  T
Q  364 gtagcatatgcatgtaaacatcataggtcactttcgattaattccaaa 411  Q
    |||| |||||||| ||  ||||||| | || || |||||| |||||||    
T  20407338 gtagtatatgcatataggcatcataagccaattccgattagttccaaa 20407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 57 - 373
Target Start/End: Original strand, 193 - 508
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||| |||||| ||||||||||||| ||||||||||||| | | | |||||||||| |||||||||||||||||||||  |||||||||||||    
T  193 atcatcatcaataacaattacctcaaagaaacgacaaagtttcaaaatcaaatttcacataaa-gacggacaactatccacatcaaaacattcatcatat 291  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaag 256  Q
    ||||||   || || | || |||||| || |||||||||||  |||||||| | ||  |||||  ||||||||||  |||||||    ||||||||||||    
T  292 taaacaccaaaccatcgtttattcatcctcattctatcataccatcatgaataaaagtcaattataagttatccgagcataaaacattattttgacaaag 391  T
Q  257 tttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatat 356  Q
    || ||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||| || ||||| ||| |||| ||||| |||  |||||||||||     
T  392 ttcgtctattttcacaactttcaacattttctaagtaatttaacaaaacaaggtaaacatgatcaaacacctcaacaaagtatatatactactcacataa 491  T
Q  357 gatcacagtagcatatg 373  Q
    |||||||||||||||||    
T  492 gatcacagtagcatatg 508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 100825 - 100472
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaa-gaatcatcatcag---------caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaa 109  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||          |||||||||||||||||||| |||||||| ||| ||||||  ||     
T  100825 catcatcaattcatcaagttataatcaccaaaagaatcatcatcaaaatcaccatcaacaacaatcacctcaaaggaacaacaaggtt-caaagtcgcat 100727  T
Q  110 ttcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca 209  Q
    ||||||||||||||||||| |||| ||||||| || ||||||||| |||||||  ||| || ||||||||||||||||||||||||||| ||| | | ||    
T  100726 ttcacataaaagacggacatctattcacatcatgatattcatcatgttaaacacccaaccatcattgattcattcttattctatcatatcatcttaagca 100627  T
Q  210 t-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaat 308  Q
    | || | |||| ||||||||||  |||| ||| ||| |||| |||||||| ||||||||| |  |||||||||| || | |||||||| ||||||||||     
T  100626 tgaagctaattacaagttatccaatcatgaaaccactttttaacaaagttcgtctattttcatcactttctacagttcctaagtaattcgacaaaacaag 100527  T
Q  309 gtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcaca 363  Q
    |||||   ||||||| ||| |||||||| | |||| ||||||||| |||||||||    
T  100526 gtaaataagttcaaacacctcaaccaagcatatacactactcacacatgatcaca 100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 12465748 - 12465492
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||  |||||| ||||||||||||||||||||||||||   ||||| ||||||||||  |||||| || |||||||||| ||| |||||| |||    
T  12465748 catcatcaaatcatcaaattaaaatcaccaaagaatcatcatca---acaactatcacctcaagaaaacaataatgtttcaaagtcacatttcacacaaa 12465652  T
Q  120 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca-taaaccaat 218  Q
    ||||||||| |||   |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||| |  ||| ||||    
T  12465651 agacggacatctaaatacatcatgacattcatcatattaaacacccaatcatcattgattcattcttattctatcatatcatcatgaatacaaaatcaat 12465552  T
Q  219 tgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttc 278  Q
    | |||||||| ||  |||||||   ||||||||||||||| ||||||||| || ||||||    
T  12465551 tacaagttattcgaccataaaacatcattttgacaaagttcgtctattttcacaactttc 12465492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 113 - 369
Target Start/End: Original strand, 14353280 - 14353537
Alignment:
Q  113 acataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataa 212  Q
    ||||||||||||||||| || |||||| |   |||||||||| || ||||| |||||  |||||| ||| | |||| ||||||||||||||| ||  |||    
T  14353280 acataaaagacggacaattaaccacattatcccattcatcatttttaacatccaatcttcattgactcaattttatgctatcatattatcataaaagtaa 14353379  T
Q  213 a-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgta 311  Q
    | |||||||||||||||||| |||| |||||||||||| |||||||| ||| ||||| || ||||||||||||||| ||||||||  ||||||||| |||    
T  14353380 aaccaattgcaagttatccgatcatgaaatcacattttaacaaagttcgtcaattttcaccactttctacattttctaagtaattccacaaaacaaggta 14353479  T
Q  312 aacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagca 369  Q
    ||| || ||||| |||||||||||| | |||| ||||||||||||||||||| |||||    
T  14353480 aacatgatcaaacaccccaaccaagcatatacactactcacatatgatcacaatagca 14353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 12486682 - 12486858
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||| ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  12486682 atcatcatcaacaacaatcacctcaaagaaacaatacagtttcaaagtcacttttcacataaaagacagacaattatccacattacgacattcatcatat 12486781  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccgg 232  Q
    ||||||  | |||| |||||||||||||||||||||| |||| |||||||| | ||| |||||| ||| ||||||||    
T  12486782 taaacaccccatcatcattgattcattcttattctataatatcatcatgaatacaaagccaattacaaattatccgg 12486858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 171 - 432
Target Start/End: Original strand, 20109904 - 20110166
Alignment:
Q  171 acattgattcattcttattctatcatattatcatgaacataaacc-aattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 269  Q
    |||||||||||||||||||||||||||| ||| | | ||| || | ||||||||||||||||||||| ||| || ||||| ||||||||  ||||||||     
T  20109904 acattgattcattcttattctatcatatcatcttaatcatgaagctaattgcaagttatccggtcatgaaaccagattttaacaaagttcatctattttc 20110003  T
Q  270 actactttctacattttccaa-gtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagc 368  Q
     | ||||||||||||| | || ||||||  |||||||||||||||| ||| |||| ||| |||||||| | ||||  || ||||||||||||| ||||||    
T  20110004 gccactttctacatttcctaatgtaattcaacaaaacaatgtaaacttgtgcaaacacctcaaccaagcatatacattattcacatatgatcatagtagc 20110103  T
Q  369 atatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctca 432  Q
    |||| ||| ||| ||||||||| || || ||||| ||||||||| |||| |||||||| |||||    
T  20110104 atattcatataagcatcataggccaattccgattgattccaaaatttcg-ctaagttcgtctca 20110166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 9520630 - 9520801
Alignment:
Q  65 caacaacaatcacctcaaagaaa-caacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacat 163  Q
    |||||||||||| |||||||||| ||| |||||||||| || ||  ||||| |||| ||||||||||||||||  | | ||||||||||| ||||||||     
T  9520630 caacaacaatcaactcaaagaaaacaataaagtttcaa-gtcacctttcacctaaa-gacggacaactatccatcttatgacattcatcaaattaaacac 9520727  T
Q  164 gcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 236  Q
     |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  9520728 ccaatcatcattgattcattcttattctatcatatcatcatgaacataaagccaattgcaagttatccggtcat 9520801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 23295357 - 23295183
Alignment:
Q  143 gacattcatcatattaaacatgcaatcaacattgattcattcttattctat--catattatcatgaacataaac-caattgcaagttatccggtcataaa 239  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||| ||| | | |||  |  |||||||||||||||||||  | ||    
T  23295357 gacattcaccatattaaacatccaaccaacattgattcattcttattctatatcatatcatcttaagcatgtagtcaattgcaagttatccggttttgaa 23295258  T
Q  240 atcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaac 314  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||    
T  23295257 atcacattttaacaaagtttgtctattttaaccactttctacattttctaagtaattttacaaaacaaggtaaac 23295183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 376
Target Start/End: Original strand, 23298637 - 23298921
Alignment:
Q  92 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattct 191  Q
    ||||||||||| | ||| ||  ||||||||||||||||||| |||||||| | |||||||  |||| || |  |||||| ||||||||||||| |||  |    
T  23298637 aaagtttcaaaatcacattttgcataaaagacggacaactaaccacatcatggcattcattgtatttaatactcaatcatcattgattcattcgtatcat 23298736  T
Q  192 atcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaa 290  Q
    ||| |||||||||||   |||| ||| || |||||||||| ||| ||||  |||||||| | |||||| ||||||||| || |||||| |||||||| ||    
T  23298737 atcctattatcatgagagtaaagccacttacaagttatccagtcttaaac-cacattttaataaagttcgtctattttcacaactttccacattttctaa 23298835  T
Q  291 gtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 376  Q
    ||||||  ||||||||| ||||||  | ||||| |||  ||| ||| | |||| ||||||||||| ||||||||||||||||||||    
T  23298836 gtaattcaacaaaacaaggtaaacacgatcaaacacctaaacaaagcatatacactactcacataagatcacagtagcatatgcat 23298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 368
Target Start/End: Original strand, 14985482 - 14985682
Alignment:
Q  169 caacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 267  Q
    ||||| ||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||| ||||||| |||||| ||||| ||||||||  |||||||    
T  14985482 caacaatgattcattcttattttaccatatcatcatgaagataaaaccaattgcaagttattcggtcatgaaatcatattttaacaaagttcatctattt 14985581  T
Q  268 ttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtag 367  Q
    | || ||||||||||| ||| ||| || || ||||||||| ||| || |||||||| | | |||| ||| | |||  ||| |||||||||||||||||||    
T  14985582 tcaccactttctacatcttctaagcaagttaacaaaacaaggtatacatgttcaaacaactcaacaaagcatataaactagtcacatatgatcacagtag 14985681  T
Q  368 c 368  Q
    |    
T  14985682 c 14985682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 23090052 - 23089879
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 130  Q
    |||||||||| ||||||||||  | ||| |||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  ||||| | |||||||||    
T  23090052 catcaagttagaatcaccaaa--agcattatcatcaacaagtatcacctcaaagaaacaataacgtttcacaaccacattttgcataagaaacggacaac 23089955  T
Q  131 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatga 206  Q
    || |||||||| ||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||| ||||    
T  23089954 taaccacatcatgacattcatcatattaaacacccaaccatcattgattcattcttattctatcatattattatga 23089879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 14797284 - 14797451
Alignment:
Q  60 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagtt-acaattcacataaaagacggacaactatccacatcacgacattcatcatatta 158  Q
    |||| ||||||||||||||||||  |||||||||| |||||||  | ||| ||||||| |||||||||||  || |||||||| | |||||| |||||||    
T  14797284 atcatcaacaacaatcacctcaagaaaacaacaaaatttcaaaaatcacatttcacatcaaagacggacatttaaccacatcatggcattcaacatatta 14797383  T
Q  159 aacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaattgcaagtt 226  Q
    ||||| |||||  |||| |||||||||||||||||||||| |||||||| |||| ||| || ||||||    
T  14797384 aacattcaatcgtcattaattcattcttattctatcatatcatcatgaatataatccatttacaagtt 14797451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 253 - 376
Target Start/End: Complemental strand, 19977988 - 19977864
Alignment:
Q  253 aaagtttgtctatttttactactttctacattttcc-aagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactca 351  Q
    |||||||||||||||| || ||||||||||||||   ||||| ||  |||||||||||||||| || ||||| ||| ||||||||   |||| |||||||    
T  19977988 aaagtttgtctattttcaccactttctacatttttttaagtatttcaacaaaacaatgtaaacatgatcaaacacctcaaccaagcttatacactactca 19977889  T
Q  352 catatgatcacagtagcatatgcat 376  Q
    |||||||| |||||||| |||||||    
T  19977888 catatgatgacagtagcttatgcat 19977864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 22544776 - 22544960
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| | ||||| ||||||||||| |||||  |  |||||||| | ||| ||  ||||||||||||||||||| |||||||| || |||||||||||    
T  22544776 atcatcatcgacaactatcacctcaaataaacattaccgtttcaaaatcacattttgcataaaagacggacaactaaccacatcatgatattcatcatat 22544875  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaa 240  Q
    | ||||   ||||| ||||||||||| |||||  |||| ||||||||| |  | |||  || |||||||||||||| ||||||||    
T  22544876 tcaacactaaatcatcattgattcatgcttatcttatcctattatcataattacaaagacatttgcaagttatccgatcataaaa 22544960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 17913352 - 17913523
Alignment:
Q  114 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattga---------------ttcattcttattctatcatat 198  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||||  |||||| ||||||               |||||||||||| |||| |||    
T  17913352 cataaaagatggacaactaaccacatcatgacattcatcatattaaacacccaatcatcattgacctcatcatcattgtttcattcttattgtatcctat 17913451  T
Q  199 tatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 269  Q
    |||||| | || ||| ||||||||||||||| || |||||||| | |||||||||||| || || |||||||    
T  17913452 tatcataatcacaaatccaattgcaagttattcgatcataaaacctcattttgacaaacttcgtttattttt 17913523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 22524029 - 22523925
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||| ||| |||||||||||||||| ||| |||| | ||| ||||||| ||||||||||   || |||||||| |||||||||||  |    
T  22524029 atcatcatcaacaacattcatctcaaagaaacaacaaggttccaaattcacatttcacat-aaagacggacttgtagccacatcatgacattcatcaatt 22523931  T
Q  157 taaaca 162  Q
    ||||||    
T  22523930 taaaca 22523925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 21746672 - 21746615
Alignment:
Q  211 aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    |||||| |||||||||||||| |||||||| | ||||||||| ||||| |||||||||    
T  21746672 aaaccatttgcaagttatccgatcataaaacctcattttgactaagttcgtctatttt 21746615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 14985397 - 14985473
Alignment:
Q  72 aatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacatt 148  Q
    |||| ||||||| ||||||||| |||||||  | ||  ||||||||||||||||| ||||| |||||||| ||||||    
T  14985397 aatctcctcaaaaaaacaacaaggtttcaatttcacgtttcacataaaagacggataactacccacatcatgacatt 14985473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 14874697 - 14874659
Alignment:
Q  169 caacattgattcattcttattctatcatattatcatgaa 207  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  14874697 caacattgattcattcttatttcatcatattatcatgaa 14874659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 14567688 - 14567603
Alignment:
Q  144 acattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttat 228  Q
    ||||||| ||||||| |||| |||||| |||  ||||||| |||||||||  ||  |||||||||||||| | |||||||||||||    
T  14567688 acattcaacatattagacatccaatcatcatcaattcatttttattctatactaccatcatgaacataaagcaaattgcaagttat 14567603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 23298555 - 23298599
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaag-aatcatcatca 63  Q
    |||||||||| |||||||||||||||||||| | |||||||||||    
T  23298555 catcatcaattcatcaagttaaaatcaccaaggaaatcatcatca 23298599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 31 - 412
Target Start/End: Original strand, 24193096 - 24193474
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 130  Q
    |||||| || |||| ||||||||||||||||||   |||||||||| || ||||||||||||||||| |||| | |||  |  |||||| ||   | ||     
T  24193096 catcaaatttaaattaccaaagaatcatcatca---acaacaatcaacttaaagaaacaacaaagttccaaaatcacatcttgcataaacgataaaaaat 24193192  T
Q  131 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatc 229  Q
    ||||||| ||| |||||| |||||||||||||| ||||   |||||||||||||||||| || ||||| ||| | | ||| ||  |||||||||||||||    
T  24193193 tatccacgtcatgacattaatcatattaaacatccaattctcattgattcattcttattataacatatcatcttaagcatgaagtcaattgcaagttatc 24193292  T
Q  230 cggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaatacccc 329  Q
    ||||||| |||||||||||| |||||||| ||||||||  || |||||||||| |||| ||||||||  |||||| || |||||| ||| | || ||| |    
T  24193293 cggtcatgaaatcacattttaacaaagttcgtctatttccacaactttctaca-tttctaagtaattcaacaaaataaggtaaacatgtcctaacacctc 24193391  T
Q  330 aaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 412  Q
    ||||||| | |||| ||||||||||||||| | ||||||| |||||| ||  ||| ||||| || ||  ||||||||||||||    
T  24193392 aaccaagcatatacactactcacatatgattagagtagcacatgcatataggcattataggccaattctgattaattccaaaa 24193474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 57 - 268
Target Start/End: Original strand, 17363101 - 17363312
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| || | |||||||||||||||||| |||||||||||||| | | ||||||||| ||| ||||||||||| |||| ||| | |||||| |||||    
T  17363101 atcatcatcatcgacaatcacctcaaagaaataacaaagtttcaaaatcataattcacatcaaa-acggacaactaaccacttcatggcattcaacatat 17363199  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatc--atgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaa 254  Q
    ||||||   | ||| |||||||||||||||||||||||||||||||  ||| ||| || ||||||||||||||||||||||| ||| |||||||| ||||    
T  17363200 taaacacctactcatcattgattcattcttattctatcatattatcttatgcaca-aagccaattgcaagttatccggtcatgaaaccacattttaacaa 17363298  T
Q  255 agtttgtctatttt 268  Q
    |||| |||||||||    
T  17363299 agttcgtctatttt 17363312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 118 - 412
Target Start/End: Complemental strand, 208731 - 208436
Alignment:
Q  118 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-cca 216  Q
    ||||||||||| ||| ||||| || || ||||||||  ||| |||| | | ||||||| ||||||||||||| ||||||| ||||||||||||||| |||    
T  208731 aaagacggacacctaaccacaacatgatattcatcactttagacatccgaccaacattcattcattcttattttatcatactatcatgaacataaaacca 208632  T
Q  217 attgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgt 316  Q
    |||| ||||||||| ||||  |||| |||  || |||||||||||||||||  || |||||||| |||||| ||||||||  | ||||||| ||||||||    
T  208631 attgtaagttatccagtcaagaaattacacattaacaaagtttgtctatttccacaactttctatattttctaagtaattcaataaaacaaggtaaacgt 208532  T
Q  317 gttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 412  Q
    | ||||| ||| |||||||| | |||| ||||||||||||||||||| || |||||||||  |  ||||||||| || ||  ||||||||||||||    
T  208531 gatcaaacacctcaaccaagcatatacactactcacatatgatcacaataacatatgcatacaggcatcataggccaattctgattaattccaaaa 208436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 169 - 404
Target Start/End: Complemental strand, 211787 - 211551
Alignment:
Q  169 caacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 267  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| ||||  ||||||||  || |||||||||||||||||    
T  211787 caacattgattcattcttatactatcatactatcatgaacataaaaccaattgtaagttatccagtcaagaaatcacacattaacaaagtttgtctattt 211688  T
Q  268 ttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtag 367  Q
     | | |||||||| |||||| ||||||||  | ||| ||| ||||||||| ||||| ||| |||||||  | |||| |||||||||||||||||||||||    
T  211687 ctgcaactttctatattttctaagtaattcaataaagcaaggtaaacgtgatcaaacacctcaaccaaacatatacactactcacatatgatcacagtag 211588  T
Q  368 catatgcatgtaaacatcataggtcactttcgattaa 404  Q
    ||||| ||| ||  ||||||||| || || |||||||    
T  211587 catattcatataggcatcataggccaattccgattaa 211551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 40 - 267
Target Start/End: Original strand, 17508485 - 17508710
Alignment:
Q  40 aaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacat 139  Q
    ||||||||||||||||||||||||   ||||| || |||||||||||||||||| |||| ||||| | | ||   |||||||| ||| ||||||||||||    
T  17508485 aaaatcaccaaagaatcatcatca---acaactattacctcaaagaaacaacaatgttttaaagtcagattttgaataaaagatggataactatccacat 17508581  T
Q  140 cacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataa 238  Q
    || ||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| | |||||  | ||| |||||||||||||||||| ||||||    
T  17508582 catgacattcatcatattaaacacccaatcatcattgattcattcatattctatcatatcaacatgagtacaaagccaattgcaagttatccgatcataa 17508681  T
Q  239 aatcacattttgacaaagtttgtctattt 267  Q
    || | |||||  |||||||| ||||||||    
T  17508682 aacctcatttcaacaaagttcgtctattt 17508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 25262180 - 25262422
Alignment:
Q  31 catcaagttaaaatcaccaaag-aatcatcatcagcaacaacaat---cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacgga 126  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |   |||||  || |||| | ||||||||| | |  || || || ||||||||| |    
T  25262180 catcaagttaaaatcaccaaaggaatcatcatcatcaacaacatttaacacctgtaaaaaacgataaagtttcacaatatcattttacgtaaaagacgaa 25262279  T
Q  127 caactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacata-aaccaattgcaagt 225  Q
    ||| ||||||||| |  ||||||| |||||||||||  || ||| ||||||||||||||||| ||||||||||| ||||||  || ||||| || |||||    
T  25262280 caattatccacattaaaacattcaccatattaaacagtcattcatcattgattcattcttatcctatcatattaccatgaaggtacaaccatttacaagt 25262379  T
Q  226 tatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||| |||  |||||| | |||||||||||||  ||||||||    
T  25262380 tatccagtctaaaaatctctttttgacaaagttcatctatttt 25262422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 21686909 - 21687039
Alignment:
Q  242 cacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacat 341  Q
    |||||||| |||||||| ||||||||| || |||||||| |||||| ||||||||  ||||||||| |||||| || ||||| ||| |||| | | ||||    
T  21686909 cacattttaacaaagttcgtctattttcaccactttctatattttctaagtaattcaacaaaacaaggtaaacatgatcaaacacctcaacaaggcacat 21687008  T
Q  342 acgctactcacatatgatcacagtagcatat 372  Q
    || |||||||||||||||||||||| |||||    
T  21687009 acactactcacatatgatcacagtaccatat 21687039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 21691233 - 21691363
Alignment:
Q  242 cacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacat 341  Q
    |||||||| |||||||| ||||||||| || |||||||| |||||| ||||||||  ||||||||| |||||| || ||||| ||| |||| | | ||||    
T  21691233 cacattttaacaaagttcgtctattttcaccactttctatattttctaagtaattcaacaaaacaaggtaaacatgatcaaacacctcaacaaggcacat 21691332  T
Q  342 acgctactcacatatgatcacagtagcatat 372  Q
    || |||||||||||||||||||||| |||||    
T  21691333 acactactcacatatgatcacagtaccatat 21691363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 264
Target Start/End: Original strand, 24401185 - 24401340
Alignment:
Q  110 ttcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca 209  Q
    ||||||||||||| ||||||||  |||||||| |||||| ||||| || ||||   ||||  |||||||| ||||||||| |||| |||||||||||| |    
T  24401185 ttcacataaaagatggacaactgaccacatcatgacatttatcatttttaacacaaaatcttcattgattaattcttattgtatcctattatcatgaaaa 24401284  T
Q  210 t-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtcta 264  Q
    | ||| || || |||||||||||||  ||||||| | ||||||||||||| |||||    
T  24401285 taaaatcatttacaagttatccggtgttaaaatctctttttgacaaagttcgtcta 24401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 21684776 - 21684863
Alignment:
Q  149 catcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 236  Q
    ||||||||||||||  |||||||||||||||||||||||||| | || || |||||| ||||||| |||||||||| |||| |||||||    
T  21684776 catcatattaaacacccaatcaacattgattcattcttattcca-cagatcatcatggacataaagccaattgcaaattattcggtcat 21684863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 21689125 - 21689212
Alignment:
Q  149 catcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 236  Q
    ||||||||||||||  |||||||||||||||||||||||||| | || || |||||| ||||||| |||||||||| |||| |||||||    
T  21689125 catcatattaaacacccaatcaacattgattcattcttattcca-cagatcatcatggacataaagccaattgcaaattattcggtcat 21689212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 12517601 - 12517686
Alignment:
Q  347 actcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctcact 434  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || || ||||||||||| ||||||| ||||||||| |||||||    
T  12517601 actcacataagatcacagtagcatatgcatat-agcatcataggacaattccgattaattcc-aaaattcacctaagttcgtctcact 12517686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 24401426 - 24401508
Alignment:
Q  349 tcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctca 432  Q
    |||||||||||||||||||||||| ||| |  |||||||| | || |||||||||||||| ||||||| ||||||||| |||||    
T  24401426 tcacatatgatcacagtagcatatacatatccacatcataagccaatttcgattaattcc-aaaattcacctaagttcgtctca 24401508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 21684711 - 21684759
Alignment:
Q  71 caatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  21684711 caatcacctcaaagaaacgacaaggtttcaaaattacatttcacataaa 21684759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 21689060 - 21689108
Alignment:
Q  71 caatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  21689060 caatcacctcaaagaaacgacaaggtttcaaaattacatttcacataaa 21689108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 432
Target Start/End: Original strand, 25262471 - 25262586
Alignment:
Q  316 tgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaatt 415  Q
    |||||||| ||| |||| ||| | |||| ||  |||||||| ||||||||||||||| ||| |  |||||||| | || || ||||||||||| ||||||    
T  25262471 tgttcaaacacctcaacaaagcatatacactcatcacatattatcacagtagcatatacatatccacatcataagccaattccgattaattcc-aaaatt 25262569  T
Q  416 cgcctaagttcatctca 432  Q
    | ||||||||| |||||    
T  25262570 cacctaagttcgtctca 25262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2017 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold2017
Description:

Target: scaffold2017; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 639 - 917
Alignment:
Q  134 ccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccgg 232  Q
    |||||||| || ||| |||| || |||||| |||  ||||||||||||||||| ||| || |||||||||| |||||||| ||||||| |||| || |||    
T  639 ccacatcatgatatttatcacatcaaacatccaaataacattgattcattcttcttccattatattatcatcaacataaaaccaattgtaagt-atacgg 737  T
Q  233 tcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaac 332  Q
    |||  |||| ||||||| |||||||| ||||||||  || ||||| ||||||||| ||  |||| |||||||||| |||||| || ||||||| | ||||    
T  738 tcaagaaataacattttaacaaagttcgtctatttccacaactttttacattttctaataaattcgacaaaacaaggtaaacatgatcaaatatctcaac 837  T
Q  333 caagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 412  Q
    |||  | ||||  ||||||||||||||||||||||| ||| ||| ||  ||||||||| || || |||||||||| ||||    
T  838 caaaaatatacaatactcacatatgatcacagtagcttatacatataggcatcataggccaattccgattaattcaaaaa 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 20147563 - 20147755
Alignment:
Q  74 tcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaaca 173  Q
    |||| |||||||||||| |||||||||  || | | ||  |||||||||||||||||||||||||||| ||||||||||||||| ||||  ||||||  |    
T  20147563 tcacatcaaagaaacaataaagtttca--gtcatattttgcataaaagacggacaactatccacatcaagacattcatcatattgaacacccaatcatta 20147660  T
Q  174 ttgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||| ||||||||||||||||||||| |||||||||| ||  || || |||||||| || ||||||||   ||||||||||||||| |||| ||||    
T  20147661 ttggttcattcttattctatcatatcatcatgaacacaagacatttacaagttattcgatcataaaacatcattttgacaaagttcgtctttttt 20147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 6461216 - 6461005
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| | | ||| ||  |||||| |||||||||||| |||||||| |||  |||||||||    
T  6461216 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaatcacattttgcataaa-gacggacaactaaccacatcatgactatcatcatat 6461118  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    ||||||  ||| || ||||| ||||||||||||||||| |||||| | ||| | ||| ||| ||||||||||||||  ||||||| | ||||||||||||    
T  6461117 taaacacccaaccatcattgtttcattcttattctatcctattattaagaatacaaagccatttgcaagttatccgaccataaaacctcattttgacaaa 6461018  T
Q  256 gtttgtctatttt 268  Q
    ||| || ||||||    
T  6461017 gttcgtgtatttt 6461005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 16195992 - 16196239
Alignment:
Q  20 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 119  Q
    |||||||||| |||||||||||||||||||||| |  ||||||| |||||   | ||||| |||||||| | ||||||||| | |  |  || |||||||    
T  16195992 catcatcaattcatcaagttaaaatcaccaaagga--atcatcatcaacattta-cacctgaaagaaacgataaagtttcacaatcccgttttacataaa 16196088  T
Q  120 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaaccaat 218  Q
    |||||||||| ||||||||  | |||||||| |||||||||||  || ||| ||||||||||||| |||   ||||||||||||||||  | |||  | |    
T  16196089 agacggacaattatccacaataagacattcaccatattaaacacccattcatcattgattcattcgtatatgatcatattatcatgaaggtaaaattatt 16196188  T
Q  219 tgcaagttatccggtcataaaat-cacattttgacaaagtttgtctatttt 268  Q
    | |||||||||||||| ||||||  |  |||||||||||||||||||||||    
T  16196189 tacaagttatccggtcttaaaatatattttttgacaaagtttgtctatttt 16196239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 17162296 - 17162135
Alignment:
Q  136 acatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtc 234  Q
    |||||| |||||||||||||||||||    ||||| |||| |||||||||||||||||||||| ||||| | || ||| |||||| |||| ||||| |      
T  17162296 acatcatgacattcatcatattaaacccctaatcatcatttattcattcttattctatcatatcatcataagcacaaagccaattacaagctatccaggt 17162197  T
Q  235 ataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatt 296  Q
    |||||| | |||||  |||||||| ||||||||| || ||||||  ||||||| ||||||||    
T  17162196 ataaaacctcatttcaacaaagttcgtctattttcacaactttcatcattttctaagtaatt 17162135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 14973906 - 14973780
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 130  Q
    |||||| |||||||||| ||||||||||||||    ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||||| ||||  |    
T  14973906 catcaaattaaaatcacaaaagaatcatcatcg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aaagatggacctc 14973811  T
Q  131 tatccacatcacgacattcatcatattaaac 161  Q
    || |||||||| || ||||||||||||||||    
T  14973810 taaccacatcatgatattcatcatattaaac 14973780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 15403382 - 15403256
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 130  Q
    |||||| |||||||||| ||||||||||||||    ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||||| ||||  |    
T  15403382 catcaaattaaaatcacaaaagaatcatcatcg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aaagatggacctc 15403287  T
Q  131 tatccacatcacgacattcatcatattaaac 161  Q
    || |||||||| || ||||||||||||||||    
T  15403286 taaccacatcatgatattcatcatattaaac 15403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 126 - 268
Target Start/End: Original strand, 13488251 - 13488394
Alignment:
Q  126 acaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaac-caattgcaag 224  Q
    ||||||| |||||||| ||||||||||| |||| | || ||| || |  |||||||||||||||||||| ||| || ||||  | |||  || |||||||    
T  13488251 acaactaaccacatcatgacattcatcacattataaatccaaccatccatgattcattcttattctatcctatcattatgattacaaagtcatttgcaag 13488350  T
Q  225 ttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||| ||||| || | ||||||||||||||| |||||||||    
T  13488351 ttatccgatcatagaacctcattttgacaaagttcgtctatttt 13488394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 11775143 - 11775050
Alignment:
Q  114 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    ||||||| |||||||| || |||||||||||||||||||| ||||||||  |||  | |||| ||||||||| ||||||||||| || ||||||    
T  11775143 cataaaatacggacaattaaccacatcacgacattcatcaaattaaacaaccaaatatcattaattcattctcattctatcatactaacatgaa 11775050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 14266982 - 14266882
Alignment:
Q  169 caacattgattcattcttattctatcatattatcatgaa-cataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 267  Q
    |||||||||||||||| |||| |||||||||||||||||  | ||||||||  |||| |||  | |||||||| | ||||||||||||||| ||||||||    
T  14266982 caacattgattcattcgtattttatcatattatcatgaataaaaaaccaatcacaaggtataagatcataaaagctcattttgacaaagttcgtctattt 14266883  T
Q  268 t 268  Q
    |    
T  14266882 t 14266882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 16093850 - 16093935
Alignment:
Q  122 acggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    |||||||||||| |  || | ||||||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||| ||||||    
T  16093850 acggacaactattcgtataatgacattcatcatattaaacatccaatcatgattaattaattcctattctatcatattagcatgaa 16093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 17492424 - 17492374
Alignment:
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    |||||||||||||| |||||||||  ||||||||||||||| |||||||||    
T  17492424 ttgcaagttatccgatcataaaatttcattttgacaaagttcgtctatttt 17492374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 17560790 - 17560840
Alignment:
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    |||||||||||||| |||||||||  ||||||||||||||| |||||||||    
T  17560790 ttgcaagttatccgatcataaaatttcattttgacaaagttcgtctatttt 17560840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 15010261 - 15010168
Alignment:
Q  114 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 207  Q
    ||||||||||||||||  | | |||||||||||| ||||||||||||||  | |||| |||||||||||  | |||| ||||||| | ||||||    
T  15010261 cataaaagacggacaaacaacaacatcacgacatccatcatattaaacaccccatcatcattgattcatcatcattcaatcatataaacatgaa 15010168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 11774939 - 11774844
Alignment:
Q  317 gttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 412  Q
    |||||||| || ||||||||||||||| | | ||||||||||   ||||||||||| ||| ||   |||||||| || || |||||||||||||||    
T  11774939 gttcaaatccctcaaccaagtacatacacaattcacatatgagtgcagtagcatatacatatacgtatcataggccaattccgattaattccaaaa 11774844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 20911701 - 20911616
Alignment:
Q  76 acctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaaca 162  Q
    ||||||| ||||| | ||||||||||| | ||| |||||||||| |||||||| ||| ||||| |  ||| ||||||||||||||||    
T  20911701 acctcaaggaaacgataaagtttcaaattcacatttcacataaa-gacggacatctagccacaacgtgaccttcatcatattaaaca 20911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 31433 - 31193
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||||| | ||| ||  ||||| |||| ||  || |||||||| | |||||||| |||||    
T  31433 atcatcatcaacaactttcacctcaatgaaacaacaaagtttcaaaatcacattttgcataatagacagaatacgatccacataatgacattcaacatat 31334  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
    || |||  |||||| |||||||||||||||| |||||||||| ||||| | || ||| ||||||||||||||||| || |||||| | |||||  |||||    
T  31333 tagacacccaatcatcattgattcattcttactctatcatatcatcataagcacaaagccaattgcaagttatccagttataaaacctcatttcaacaaa 31234  T
Q  256 gtttgtctatttttactactttctacattttccaagtaatt 296  Q
    |||  |||||||| || ||||||   |||||| ||||||||    
T  31233 gttcatctattttcacaactttcattattttctaagtaatt 31193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 2557 - 2772
Alignment:
Q  53 aatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatc 152  Q
    ||||||||| |  |||||| |||||||||| ||||||| |||||||||   | ||| ||||||||||| ||| ||| ||| |||||||| ||||||||||    
T  2557 aatcatcattattaacaactatcacctcaaggaaacaataaagtttcacgatcacatttcacataaaatacgaacatctaaccacatcatgacattcatc 2656  T
Q  153 atattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttga 251  Q
    ||||||||||   ||||| |||||||||||||||| |||||||||| |||||||| | ||| ||||||  ||||||| ||  |||| || | || |||||    
T  2657 atattaaacaccaaatcatcattgattcattctta-tctatcatatcatcatgaatacaaagccaattaaaagttattcgaacatacaacctcaatttga 2755  T
Q  252 caaagtttgtctatttt 268  Q
    ||||||| |||||||||    
T  2756 caaagttcgtctatttt 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 38278122 - 38277993
Alignment:
Q  60 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaa 159  Q
    |||| ||| |||||||||||||||||||| |||||||||| || |  || ||||  ||||||| ||||||||||| ||||||||||||||||| ||||||    
T  38278122 atcatcaataacaatcacctcaaagaaacgacaaagtttcgaaatcgcatttcatgtaaaagatggacaactatctacatcacgacattcatcgtattaa 38278023  T
Q  160 acatgcaatcaacattgattcattcttatt 189  Q
     ||| |||||| ||||||||||||||||||    
T  38278022 gcattcaatcatcattgattcattcttatt 38277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 9637346 - 9637227
Alignment:
Q  82 aagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattca 181  Q
    ||||||||| || |||||||| | ||| ||  ||||||| ||||||||||| |||||||| ||||||||||||||| ||||| |||||| ||||||||||    
T  9637346 aagaaacaataacgtttcaaaatcacattttgcataaaaaacggacaactaaccacatcatgacattcatcatatttaacatccaatcatcattgattca 9637247  T
Q  182 ttcttattctatcatattat 201  Q
    |||||||| |||| ||||||    
T  9637246 ttcttattatatcctattat 9637227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 12805100 - 12805219
Alignment:
Q  273 actttctacattttccaagtaattt-gacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcata 371  Q
    |||| |||||||||| || || ||| |||||||||| ||||||||| | ||| ||| |||||||| | |||| ||||||||||||||||||| |||| ||    
T  12805100 acttcctacattttctaaatattttcgacaaaacaaggtaaacgtgattaaacacctcaaccaagcatatacactactcacatatgatcacaatagctta 12805199  T
Q  372 tgcatgtaaacatcataggt 391  Q
    ||||| ||  ||||||||||    
T  12805200 tgcatataggcatcataggt 12805219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 17385767 - 17385878
Alignment:
Q  76 acctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacatt 175  Q
    ||||||||||||||| || |||||| | | | | ||  ||||||||||||| ||||| |||||||| |||| |||||||||||||||  |||  | ||||    
T  17385767 acctcaaagaaacaataacgtttcacaatcatattttgcataaaagacggaaaactaaccacatcatgacaatcatcatattaaacacccaactatcatt 17385866  T
Q  176 gattcattctta 187  Q
    ||||||||||||    
T  17385867 gattcattctta 17385878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 14306010 - 14305960
Alignment:
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  14306010 ttgcaagttatccgatcataaaatcttattttgacaaagtttgtctatttt 14305960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 2547692 - 2547600
Alignment:
Q  92 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattc 184  Q
    ||||||||| | | ||| || |||||||||||||  ||| | ||||| || ||||||||||||||||||||  |||||| |||||||||||||    
T  2547692 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 2547600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 12794318 - 12794394
Alignment:
Q  118 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatc 194  Q
    |||||||||||| |||||| |||| ||||||||||||||| ||||  ||| |  ||| ||||| |||||||||||||    
T  12794318 aaagacggacaattatccaaatcatgacattcatcatatttaacacccaaacttcatcgattcgttcttattctatc 12794394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 25486716 - 25486672
Alignment:
Q  20 catcatcaatccatcaagttaaaatcacc-aaagaatcatcatca 63  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    
T  25486716 catcatcaattcatcaagttaaaatcaccaaaagaatcatcatca 25486672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 29650625 - 29650502
Alignment:
Q  106 acaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaa-cattgattcattcttattctatcatattatcat 204  Q
    ||||||||||||| ||||||||||  | |||||||| ||||  || ||||||| |||| |  |||  ||||||||||||||||||  ||||| |||||||    
T  29650625 acaattcacataatagacggacaatcacccacatcatgacacccaacatattatacatccg-tcactcattgattcattcttatttcatcatgttatcat 29650527  T
Q  205 gaacataaaccaattgcaagttatc 229  Q
    ||  |||| ||| ||||||||||||    
T  29650526 gagtataagccatttgcaagttatc 29650502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 10711228 - 10711169
Alignment:
Q  170 aacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttat 228  Q
    ||||||||||| ||||||||  ||||| |||||||||| || ||||||||||||||||||    
T  10711228 aacattgattccttcttatttcatcatgttatcatgaatataaaaccaattgcaagttat 10711169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 14262851 - 14262950
Alignment:
Q  172 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttac 271  Q
    |||| ||||||| |||||  |||||||||||||||| ||||  || ||| ||||||||   ||||||   | ||||||||||||||| ||||||||||||    
T  14262851 catttattcatttttatttcatcatattatcatgaatataagtcatttgtaagttatcaaatcataattcctcattttgacaaagttcgtctatttttac 14262950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 2279290 - 2279332
Alignment:
Q  170 aacattgattcattcttattctatcatattatcatgaacataa 212  Q
    |||||||||| |||||||| |||||||||||||||||| ||||    
T  2279290 aacattgattaattcttatcctatcatattatcatgaatataa 2279332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 8900452 - 8900502
Alignment:
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||||| || ||| |||| | |||||||||||||||||||||||||    
T  8900452 ttgcaagttattcgatcacaaaacctcattttgacaaagtttgtctatttt 8900502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 16220060 - 16219970
Alignment:
Q  92 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcat 182  Q
    ||||||||||| | ||| ||||  ||||||||| ||| |||||||||| | || ||||||||||||| |||  |||||| |||| ||||||    
T  16220060 aaagtttcaaattcacatttcaactaaaagacgaacatctatccacattatgatattcatcatattatacaatcaatcatcatttattcat 16219970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 5346209 - 5346241
Alignment:
Q  31 catcaagttaaaatcaccaaagaatcatcatca 63  Q
    ||||||||||||||||||||||||||| |||||    
T  5346209 catcaagttaaaatcaccaaagaatcaacatca 5346241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 117 - 268
Target Start/End: Original strand, 740 - 892
Alignment:
Q  117 aaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-cc 215  Q
    ||||||||||||| ||||||||||| || ||||| || ||||||||  || ||| | || ||||||  ||| |||||||||  |||||||| ||||| ||    
T  740 aaaagacggacaattatccacatcatgaaattcaccaaattaaacacccattcatcgtttattcatatttactctatcataaaatcatgaatataaagcc 839  T
Q  216 aattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||||||||||||||||||||| |||||  |||||||| |||||||||    
T  840 aattgcaagttatccggtcataaaatctcatttcaacaaagttcgtctatttt 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 16431 - 16342
Alignment:
Q  177 attcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctat 265  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||  |  | |||||| ||||||||||||    
T  16431 attcattcttattctatcatatcatcatgaacataaaacaaattgcaagtcatccggtcataaagacttaatttgacgaagtttgtctat 16342  T

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Target: scaffold0135 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 31412 - 31558
Alignment:
Q  65 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 164  Q
    |||||||||||| ||||| ||| |||||||||| |||| | ||| ||  |||||||||||||||| |||| |||||| ||||||||||| |||||||       
T  31412 caacaacaatcaactcaa-gaaccaacaaagttccaaaatcacatttg-cataaaagacggacaattatctacatcatgacattcatcaaattaaacgac 31509  T
Q  165 caatcaacattgattcattcttattctatcatattatcatgaacataaa 213  Q
    || ||| | | |||||||||| ||| |||||||| |||||||| |||||    
T  31510 cactcatcgtggattcattctaattttatcatatcatcatgaatataaa 31558  T

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Target: scaffold0115 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 40714 - 40620
Alignment:
Q  175 tgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||||||||| |||| ||| |||||||| | |||| || || ||| |||| ||||||||||| | |||||||||||||||||||||||||    
T  40714 tgattcattcttattatatcctatcatcatgaatacaaactcatttacaaattatacggtcataaaagctcattttgacaaagtttgtctatttt 40620  T

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Target: scaffold0115; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 40853 - 40717
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| ||||||  |||||||||| ||| ||| | | ||| ||||| ||| ||  ||||||||||||||||||| |||| |||  | ||| |||||||    
T  40853 atcatcatcaacaattatcacctcaaggaagcaatacattttaaaagtcacattttgcataaaagacggacaactaaccacgtcataatatttatcatat 40754  T
Q  157 taaacatgcaatcaacattgattcattcttattctat 193  Q
    ||||||  |||||| |||| ||||||||||| |||||    
T  40753 taaacacacaatcatcattcattcattcttaatctat 40717  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 53506 - 53711
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||||||| || | ||||   ||||||||||||| | ||| ||  |||| || |||  |||||| |||||||||||||||||| | ||    
T  53506 atcatcatcaacaacaatcaacttagagaac--acaaagtttcaaaatcacatttttcatagaatacgaccaactaaccacatcacgacattcataaaat 53603  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
     |||||  ||||   | |||||||||||||||| |||| | | |||||||||| ||| |||||| |||||||| ||||||  ||| |||| |||||||||    
T  53604 aaaacacccaattgtccttgattcattcttattttatcttgtcatcatgaacaaaaagccaattacaagttattcggtcaagaaaccaca-tttgacaaa 53702  T
Q  256 gtttgtcta 264  Q
    ||| |||||    
T  53703 gttcgtcta 53711  T

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Target: scaffold0018; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 57458 - 57663
Alignment:
Q  57 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 156  Q
    ||||||| |||||||||||| || | ||||   ||||||||||||| | ||| ||  |||| || |||  |||||| |||||||||||||||||| | ||    
T  57458 atcatcatcaacaacaatcaacttagagaac--acaaagtttcaaaatcacatttttcatagaatacgaccaactaaccacatcacgacattcataaaat 57555  T
Q  157 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 255  Q
     |||||  ||||   | |||||||||||||||| |||| | | |||||||||| ||| |||||| |||||||| ||||||  ||| |||| |||||||||    
T  57556 aaaacacccaattgtccttgattcattcttattttatcttgtcatcatgaacaaaaagccaattacaagttattcggtcaagaaaccaca-tttgacaaa 57654  T
Q  256 gtttgtcta 264  Q
    ||| |||||    
T  57655 gttcgtcta 57663  T

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Target: scaffold0018; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 53717 - 53794
Alignment:
Q  299 acaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 376  Q
    ||||||||| | ||||||| ||||| ||| |||||||| |||||| ||||| ||||||||||||| |||| |||||||    
T  53717 acaaaacaagggaaacgtgatcaaacacctcaaccaagcacatacactactgacatatgatcacaatagcttatgcat 53794  T

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Target: scaffold0018; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 57669 - 57746
Alignment:
Q  299 acaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 376  Q
    ||||||||| | ||||||| ||||| ||| |||||||| |||||| ||||| ||||||||||||| |||| |||||||    
T  57669 acaaaacaagggaaacgtgatcaaacacctcaaccaagcacatacactactgacatatgatcacaatagcttatgcat 57746  T

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Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 3664 - 3759
Alignment:
Q  172 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||||||||||||  |||||||||||||||| | || ||| ||||||||||||  ||||| ||| | |||||||| |||||| |||||||||    
T  3664 cattgattcattcttatttcatcatattatcatgaatacaacccatttgcaagttatcaagtcat-aaacctcattttgataaagttcgtctatttt 3759  T

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Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 76018 - 75897
Alignment:
Q  38 ttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccac 137  Q
    |||||||||||||||||| ||||||||   |||| ||||||||||||||| || ||  | |||||||  || ||||  |||||||||||||||||||||     
T  76018 ttaaaatcaccaaagaattatcatcag---caactatcacctcaaagaaataataatatctcaaagtcgcatttcatctaaaagacggacaactatccaa 75922  T
Q  138 atcacgacattcatcatattaaaca 162  Q
     | | || ||||||||| |||||||    
T  75921 tttatgatattcatcatgttaaaca 75897  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 48550 - 48442
Alignment:
Q  75 cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacat 174  Q
    ||||| |||||||| | ||||||||||| | ||| ||||  ||||||| ||||| |||||||| | | || |||||||||||||||||  |||||| |||    
T  48550 caccttaaagaaacgataaagtttcaaattcacatttcaactaaaagagggacatctatccacgttatgatattcatcatattaaacacccaatcatcat 48451  T
Q  175 tgattcatt 183  Q
      |||||||    
T  48450 caattcatt 48442  T

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Target: scaffold1924 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 361 - 311
Alignment:
Q  218 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 268  Q
    ||||||||||| || |||||||| | ||||||||||||||| |||||||||    
T  361 ttgcaagttattcgatcataaaacctcattttgacaaagttcgtctatttt 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 1217 - 1175
Alignment:
Q  116 taaaagacggacaactatccacatcacgacattcatcatatta 158  Q
    |||||||||| ||||||||||||||| |||||| |||||||||    
T  1217 taaaagacgggcaactatccacatcatgacattaatcatatta 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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