View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0525_low_2 (Length: 284)

Name: NF0525_low_2
Description: NF0525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0525_low_2
NF0525_low_2
[»] chr3 (12 HSPs)
chr3 (18-255)||(5503421-5503658)
chr3 (18-255)||(5490608-5490845)
chr3 (19-255)||(5485188-5485424)
chr3 (19-255)||(5853612-5853848)
chr3 (18-251)||(5455431-5455664)
chr3 (19-255)||(5526262-5526498)
chr3 (17-255)||(5446868-5447106)
chr3 (27-255)||(5827582-5827810)
chr3 (31-216)||(5848350-5848535)
chr3 (19-255)||(5801908-5802150)
chr3 (19-155)||(20344052-20344188)
chr3 (194-255)||(20344215-20344276)
[»] chr6 (1 HSPs)
chr6 (17-255)||(25808706-25808944)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 5503421 - 5503658
Alignment:
Q  18 ctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5503421 ctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagag 5503520  T
Q  118 aattctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5503521 aattctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctat 5503620  T
Q  218 acagaatctttgctccctttgcagtaaccagttgagga 255  Q
    |||||| |||||||||||||||||||||||||||||||    
T  5503621 acagaacctttgctccctttgcagtaaccagttgagga 5503658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 5490608 - 5490845
Alignment:
Q  18 ctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagag 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5490608 ctgtgtcctatctgaccattgtaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagag 5490707  T
Q  118 aattctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctat 217  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5490708 aattctttgtcagtgaccactaccgagaaattcaagactctatgcagtcttagccaagaaacaccggtgaaaagaaatccattccatgaccctcctctat 5490807  T
Q  218 acagaatctttgctccctttgcagtaaccagttgagga 255  Q
    ||||||  |||||||||||||||||||| |||||||||    
T  5490808 acagaacgtttgctccctttgcagtaactagttgagga 5490845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 5485188 - 5485424
Alignment:
Q  19 tgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagaga 118  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5485188 tgtgtcctatctgaccattgaaaacgttgtgacattccatatggatctagcaccaatctagtattaattgaactgttcaaagtttcatattgataagaga 5485287  T
Q  119 attctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485288 attctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 5485387  T
Q  219 cagaatctttgctccctttgcagtaaccagttgagga 255  Q
     ||||  ||||||||||||| | ||||||||||||||    
T  5485388 tagaacttttgctccctttgaattaaccagttgagga 5485424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 5853848 - 5853612
Alignment:
Q  19 tgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagaga 118  Q
    |||||| ||||||||||| ||| |||||||||| ||||  ||||||||||| ||| ||||||| ||||||||| ||| | ||||||||||||||||||||    
T  5853848 tgtgtcgtatctgaccatagaagacgttgtgaatttccggatggatctagctccattctagtaataattgaacggttcatagtttcatattgataagaga 5853749  T
Q  119 attctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 218  Q
    |||||||||| |||| || |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5853748 attctttgtcagtgaacattactgagaaattcaagactctgtgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 5853649  T
Q  219 cagaa-tctttgctccctttgcagtaaccagttgagga 255  Q
    || || ||||| |||||||| |||||||||||||||||    
T  5853648 caaaaatcttt-ctcccttttcagtaaccagttgagga 5853612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 5455431 - 5455664
Alignment:
Q  18 ctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagag 117  Q
    |||||||||||||| |||||| |||||||||||   ||||| ||| ||||| |||| ||||||| ||||||||||||| || ||||||||||  ||||||    
T  5455431 ctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagtaccactctagtaataattgaactgttcaaggtttcatattcgtaagag 5455530  T
Q  118 aattctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctat 217  Q
    | ||||||||| |||| || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5455531 atttctttgtcagtgaacattactgagaaattcaagactctatgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctat 5455630  T
Q  218 acagaatctttgctccctttgcagtaaccagttg 251  Q
    |||||||  |||| ||||||||||||| ||||||    
T  5455631 acagaattattgccccctttgcagtaagcagttg 5455664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 5526262 - 5526498
Alignment:
Q  19 tgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagaga 118  Q
    |||||||||||||||||||||| |||||||||| |||| | || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  5526262 tgtgtcctatctgaccattgaagacgttgtgaaattccgtttgaatctagcaccagtctagtattaattgaactgttcaaagtttcatattgataagaga 5526361  T
Q  119 attctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 218  Q
     |||||||||  |||  ||||||||||||||||||||||||  ||  |||||||| | |  |||| |||||||||||||||||||||  |||||||||||    
T  5526362 cttctttgtcactgaaaactactgagaaattcaagactctagacaaactttgccagggagaaccactgaaaagaaatccattccatggtcctcctctata 5526461  T
Q  219 cagaatctttgctccctttgcagtaaccagttgagga 255  Q
    ||||||  ||||||||||| | |||||||||||||||    
T  5526462 cagaattcttgctccctttactgtaaccagttgagga 5526498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 5446868 - 5447106
Alignment:
Q  17 cctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataaga 116  Q
    |||||||| |||||| |||||| || ||||||||  |||||| ||| |||||||| | ||||||| ||||||||||| | |||||||||||||| |||||    
T  5446868 cctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaaga 5446967  T
Q  117 gaattctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctcta 216  Q
    || ||||||||| ||||  | ||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5446968 gatttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctcta 5447067  T
Q  217 tacagaatctttgctccctttgcagtaaccagttgagga 255  Q
    |||||||   |||| || |||||||||||||||||||||    
T  5447068 tacagaaatattgccccgtttgcagtaaccagttgagga 5447106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 5827810 - 5827582
Alignment:
Q  27 atctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagagaattctttg 126  Q
    ||||||||||  |||||| | || | ||||||||||||||||||| ||||||||| | ||||||||||| || ||| ||||||||||||  | ||||||     
T  5827810 atctgaccatataaaacggtttggaattccatatggatctagcacaaatctagtaatcattgaactgttaaacgttgcatattgataagtaacttcttta 5827711  T
Q  127 tcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatacagaatct 226  Q
    || || | ||  | |||| |||||||||||||| | | | ||||||||||||| ||| ||||| || |||||||||||||||| ||||||||||||||      
T  5827710 tcagttaacatgaatgagtaattcaagactctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattg 5827611  T
Q  227 ttgctccctttgcagtaaccagttgagga 255  Q
    ||  |||||||||| ||||| ||||||||    
T  5827610 tttttccctttgcaataacctgttgagga 5827582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 5848535 - 5848350
Alignment:
Q  31 gaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagagaattctttgtcgg 130  Q
    |||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||| |    
T  5848535 gaccattgaagacgttgtgaagttccatatggatttagcacaactctagtaataattaaactgtttaaagtttcatattgaaaagtgacttctttgtcag 5848436  T
Q  131 tgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctcta 216  Q
    | | ||| | |||| ||||||| |   ||     ||||||||||| | | |||||||||||| |||||||||| ||||||||||||    
T  5848435 ttaacacaaatgagtaattcaatatattataatttctttgccaagtagctccagtgaaaagatatccattccacgaccctcctcta 5848350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 5802150 - 5801908
Alignment:
Q  19 tgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagaga 118  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||||||||| | || ||| | | |||||||  |||| |  ||||  |||| ||||||||    
T  5802150 tgtgtgctatctgaccatagaaaacgttgtgaatttccgtatggatctagtatcattcttgcaataattgacttgttcacggtttggtattcataagaga 5802051  T
Q  119 attctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaa------gaaacaccagtgaaaagaaatccattccatgaccctcc 212  Q
    ||||||||||  |||  ||||||| |||||||| |||| ||     |  |||||||      ||||||| | ||||||||||||||||||||||||||||    
T  5802050 attctttgtcattgaagactactgtgaaattcatgactttatttgttacttgccaatgccaggaaacactactgaaaagaaatccattccatgaccctcc 5801951  T
Q  213 tctatacagaatctttgctccctttgcagtaaccagttgagga 255  Q
    |||||||||||   ||||||||||||||||||| |||||||||    
T  5801950 tctatacagaactgttgctccctttgcagtaacaagttgagga 5801908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 20344052 - 20344188
Alignment:
Q  19 tgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataagaga 118  Q
    ||||||| ||| ||||||  ||||||||||| ||||||||||| ||||||||| ||||||||| ||||  || || |  | |||| ||||||||| | ||    
T  20344052 tgtgtccaatccgaccatataaaacgttgtggagttccatatgtatctagcacaaatctagtaataatgaaattggtccacgtttgatattgatatgtga 20344151  T
Q  119 attctttgtcggtgaccactactgagaaattcaagac 155  Q
     ||||||||| || | ||| | |||| ||||||||||    
T  20344152 cttctttgtcagtaatcacaaatgagtaattcaagac 20344188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 20344215 - 20344276
Alignment:
Q  194 atccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgagga 255  Q
    ||||||||||||||||||||||||||| |||  ||| |||||||||| ||||  ||||||||    
T  20344215 atccattccatgaccctcctctatacataattgttgttccctttgcaataacttgttgagga 20344276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 25808944 - 25808706
Alignment:
Q  17 cctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataaga 116  Q
    |||||||| |||||| |||||| || ||||||||  |||||| ||| |||||||| | ||||||| ||||||||||| | |||||||||||||| |||||    
T  25808944 cctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaaga 25808845  T
Q  117 gaattctttgtcggtgaccactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctcta 216  Q
    || ||||||||| ||||  | ||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25808844 gatttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctcta 25808745  T
Q  217 tacagaatctttgctccctttgcagtaaccagttgagga 255  Q
    |||||||   |||| || |||||||||||||||||||||    
T  25808744 tacagaaatattgccccgtttgcagtaaccagttgagga 25808706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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