View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_high_12 (Length: 528)
Name: NF0526_high_12
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 98 - 518
Target Start/End: Complemental strand, 53031171 - 53030746
Alignment:
| Q |
98 |
atcgtgtttctttttgtgattaggtactagtggctgattctatgatttggtttatcagcttaatgatatatcacatgatgattgtattttactaatccaa |
197 |
Q |
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| T |
53031171 |
atcgtgtttctttttgtgattaggtactagtggctgattctatgatttggtttatcagcttaatgatatatcacatgatgattgtattttgctaatccaa |
53031072 |
T |
|
| Q |
198 |
caaatcagaattatgtaaatctcagctttaatgtttcaaaaggnnnnnnnnncttttcaattcatgtgattgttgctgtggacataagggattacagaaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53031071 |
caaatcagaattatgtaaatctcagctttaatgtttcaaaagg-ttttttttcttttcaattcatgtgattgttgctggggacataagggattacagaaa |
53030973 |
T |
|
| Q |
298 |
aaattggttttagaaaacacgggtgcaaaaagtaaccccataatttgaagtgactcgaagttgtgcaatacgcaaaaaagagtgcaaaatctta------ |
391 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
53030972 |
aaattggttttagaaaacacgggtgcaaaaagcaaccccataatttgaagtgactcgaagttgagcaatacgcaaaaaagagtgcaaaatgttaaaaatt |
53030873 |
T |
|
| Q |
392 |
-aaaattgtacttactacattaagatnnnnnnnnnnntgtgcaatacgcaacccttactttgaggatacttctttctgcacgcctttacataagttttca |
490 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53030872 |
taaaattgtacttactacattaagat-aaaaaaaaaatgtgcaatacgcaacccttactttgaggatacttctttctgcacgcctttacataagttttca |
53030774 |
T |
|
| Q |
491 |
aactcagtttatccttttgatattcatc |
518 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
53030773 |
aactcggtttatccttttgatattcatc |
53030746 |
T |
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