View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_high_16 (Length: 468)

Name: NF0526_high_16
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_high_16
NF0526_high_16
[»] chr3 (2 HSPs)
chr3 (98-458)||(39427513-39427855)
chr3 (179-365)||(37462443-37462626)
[»] chr5 (2 HSPs)
chr5 (191-383)||(36224348-36224543)
chr5 (101-199)||(36225009-36225106)
[»] chr2 (21 HSPs)
chr2 (209-367)||(8579522-8579677)
chr2 (208-276)||(7611979-7612047)
chr2 (219-365)||(9061186-9061329)
chr2 (219-365)||(8573550-8573693)
chr2 (219-276)||(9364668-9364725)
chr2 (219-276)||(17566128-17566185)
chr2 (219-268)||(10347833-10347882)
chr2 (219-365)||(9065638-9065781)
chr2 (214-268)||(11987527-11987581)
chr2 (177-268)||(9291985-9292073)
chr2 (219-268)||(9321030-9321079)
chr2 (219-268)||(9328647-9328696)
chr2 (219-268)||(10335892-10335941)
chr2 (219-268)||(10353157-10353206)
chr2 (223-268)||(12018937-12018982)
chr2 (322-365)||(9274475-9274518)
chr2 (219-268)||(9284235-9284284)
chr2 (314-363)||(9291899-9291948)
chr2 (219-268)||(10371906-10371955)
chr2 (219-264)||(16269141-16269186)
chr2 (208-268)||(12006152-12006212)
[»] chr4 (2 HSPs)
chr4 (208-369)||(561172-561330)
chr4 (219-268)||(26574909-26574958)
[»] chr7 (3 HSPs)
chr7 (219-362)||(45243656-45243796)
chr7 (219-362)||(45237907-45238047)
chr7 (220-268)||(45230480-45230528)
[»] chr1 (4 HSPs)
chr1 (219-369)||(29443366-29443513)
chr1 (219-265)||(29453349-29453395)
chr1 (219-268)||(29423313-29423362)
chr1 (219-268)||(29467825-29467874)
[»] scaffold0667 (1 HSPs)
scaffold0667 (179-268)||(4519-4605)
[»] chr8 (1 HSPs)
chr8 (219-268)||(41966750-41966799)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 98 - 458
Target Start/End: Complemental strand, 39427855 - 39427513
Alignment:
Q  98 caagagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagattaaatatgtttctattttggggaagtgtctttctatgactgtga 197  Q
    ||||||||||||| ||||||||||||||||||  |      |||||||||||||||||||||||||||  ||||||| |||||||||| ||| |||||||    
T  39427855 caagagattttcaatgaggttcctcttcctgaaat------agctacaagcgagattaaatatgtttcgcttttgggaaagtgtctttgtattactgtga 39427762  T
Q  198 gttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgttt 297  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||  ||||||||||    
T  39427761 gttgtaatggaactaataagtttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttttgtaggggaatggtgttt 39427662  T
Q  298 caattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttaggggtgatttcatgagtgatctt 397  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |    
T  39427661 caattcacctttaatgtctttgaagcctttatgttattccagtgatagaagtaaagttctgttggaagtaaaatttaggggtgatttcaagagtgatcct 39427562  T
Q  398 aagaagaagcttaagaagaagctgttttggtatcatctcaaaagttataaagttacctatg 458  Q
    |||||||            |||||||||||||| |||||||||||||||||||||||||||    
T  39427561 aagaaga------------agctgttttggtattatctcaaaagttataaagttacctatg 39427513  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 365
Target Start/End: Complemental strand, 37462626 - 37462443
Alignment:
Q  179 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacat 278  Q
    ||||||| ||||||||||| || |||   ||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||| | | |||      
T  37462626 tgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttgtac-- 37462529  T
Q  279 ttgtaggtcaatggtgtttcaattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 365  Q
     ||| | | ||| |||||||| ||||||||| |  ||||||| ||||||||||||||| |||||| ||||||| ||| |||||||||    
T  37462528 -tgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttggaag 37462443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 191 - 383
Target Start/End: Complemental strand, 36224543 - 36224348
Alignment:
Q  191 actgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaat 290  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||  |||    
T  36224543 actgtgagttgttatggaactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttac-tttgtggg--aat 36224447  T
Q  291 ggtgtttcaattcacct------ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttaggggtgatt 383  Q
    ||| |||| ||||||||      || || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36224446 ggtatttcgattcaccttttaaattgatatctttgaagccttcatgttattccagtgatagaagtaaagttctgttggaagtagaattttggggtgatt 36224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 36225106 - 36225009
Alignment:
Q  101 gagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagattaaatatgtttctattttggggaagtgtctttctatgactgtgagt 199  Q
    |||||||||| |||||||||||||||| ||| ||||| || ||||||| ||||||||||||||||  |||||||  ||||||||| |||||||||||||    
T  36225106 gagattttcaatgaggttcctcttcctaatcctgaagtagttacaagcaagattaaatatgtttc-cttttgggatagtgtctttgtatgactgtgagt 36225009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 367
Target Start/End: Original strand, 8579522 - 8579677
Alignment:
Q  209 actaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctt 308  Q
    |||| |||| |||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||| |||  | | ||| ||||||  |||||    
T  8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttg-agg--attcgtgcttcaataaacctt 8579618  T
Q  309 taatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagta 367  Q
    | |  ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  8579619 tgagatctttgaagcctttgtgttattctagtgatagaagtaaagttctgttggaagta 8579677  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 7612047 - 7611979
Alignment:
Q  208 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 276  Q
    ||||| |||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  7612047 aactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 7611979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 9061186 - 9061329
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 318  Q
    ||||||||||||| |||||||| ||||||| |||| |||||||||||||| | ||||| || ||   | ||| ||||||||||||||||||    | |||    
T  9061186 ttgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactttggt---taaatcgtgtttcaattcacctttggacttttt 9061282  T
Q  319 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 365  Q
    || ||| ||||||||||| |||||| || |||| |||||||||||||    
T  9061283 gaggccgttatgttattctagtgatggaggtaaggttctgttggaag 9061329  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 8573550 - 8573693
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 318  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||| | ||||| || ||   | ||| |||||||| | ||| ||| |  ||||     
T  8573550 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttcgt---taaatcgtgtttcactccacattttaaatcttc 8573646  T
Q  319 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 365  Q
    || ||||||| ||||||| |||||| ||||||| |||||||||||||    
T  8573647 gaggcctttaggttattctagtgatggaagtaaggttctgttggaag 8573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 9364725 - 9364668
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 276  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  9364725 ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 9364668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 17566128 - 17566185
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 276  Q
    ||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||    
T  17566128 ttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttac 17566185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10347882 - 10347833
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  10347882 ttgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaa 10347833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 9065638 - 9065781
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtc-aatggtgtttcaattcacctttaatgtctt 317  Q
    |||||| |||||| |||||||||||||||| |||| |||||||||||||| | ||||| ||    |||| |||  |||||| |||||| ||| |   |||    
T  9065638 ttgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttacttt----ggtcaaatcttgtttccattcacatttgacagctt 9065733  T
Q  318 tgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 365  Q
     || |||| || |||||||| ||||| ||||||| |||||||||||||    
T  9065734 cgaggcctctaggttattccggtgatggaagtaaggttctgttggaag 9065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 11987527 - 11987581
Alignment:
Q  214 taagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    |||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||    
T  11987527 taagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 11987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 9292073 - 9291985
Alignment:
Q  177 agtgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| ||||||| | |||| ||||||||||||||    
T  9292073 agtgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaa 9291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 9321079 - 9321030
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  9321079 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 9328696 - 9328647
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  9328696 ttgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaa 9328647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10335941 - 10335892
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  10335941 ttgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaa 10335892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10353206 - 10353157
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||||||| |||| | ||||||||||||    
T  10353206 ttgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaa 10353157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 12018937 - 12018982
Alignment:
Q  223 tgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 12018982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 9274518 - 9274475
Alignment:
Q  322 gcctttatgttattccagtgatagaagtaaagttctgttggaag 365  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||    
T  9274518 gcctttatgttattctagtgatggaagtaaggttctgttggaag 9274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9284235 - 9284284
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    |||| |||||||| |||||||||||||| | |||| ||||||||||||||    
T  9284235 ttgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9284284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 9291948 - 9291899
Alignment:
Q  314 tctttgatgcctttatgttattccagtgatagaagtaaagttctgttgga 363  Q
    ||||||| ||||||||||||||| || ||| ||||||| |||||||||||    
T  9291948 tctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 9291899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10371955 - 10371906
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||| ||||||| |||||||||||||| | |||| ||||||||||||||    
T  10371955 ttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaa 10371906  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 16269186 - 16269141
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtg 264  Q
    ||||||||||||| |||||||| ||||||| |||| ||||||||||    
T  16269186 ttgatgtttgggtgatgaaagagtatggatatagagatagttggtg 16269141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 12006152 - 12006212
Alignment:
Q  208 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||| |||| ||||||| ||||| |||||||||||||| | || | ||||||||||||||    
T  12006152 aactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaa 12006212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 369
Target Start/End: Complemental strand, 561330 - 561172
Alignment:
Q  208 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacct 307  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||| |||  ||  || ||||| |  ||||    
T  561330 aactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttac-tttggagg--aagtgtttttcagtagacct 561234  T
Q  308 ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 369  Q
    || |   | | || ||||||| |||||||  |||||||||||||||||||||||||||||||    
T  561233 tttacaccatggaagcctttaggttattctggtgatagaagtaaagttctgttggaagtaga 561172  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 26574958 - 26574909
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  26574958 ttgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 26574909  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 45243796 - 45243656
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 318  Q
    ||||||||||||| |||||||||||||| | |||| ||| |||||||||| | ||||| || ||   | ||| |||||||||||  | |||    |||||    
T  45243796 ttgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttggt---taaatcgtgtttcaattttcatttggaatcttt 45243700  T
Q  319 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 362  Q
    || ||||||||||||||| |||||| ||||||||||||||||||    
T  45243699 gaggcctttatgttattcgagtgatcgaagtaaagttctgttgg 45243656  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 45238047 - 45237907
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 318  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||| | |||||   | ||| | ||| |||||||||||  | | | |  |  ||    
T  45238047 ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttac---tttagttgaatcgtgtttcaattttcatctgaaattgtt 45237951  T
Q  319 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 362  Q
    || ||||||||||||||| || ||| ||||||||||||||||||    
T  45237950 gaggcctttatgttattcaagcgatcgaagtaaagttctgttgg 45237907  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 45230528 - 45230480
Alignment:
Q  220 tgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  45230528 tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 45230480  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 369
Target Start/End: Original strand, 29443366 - 29443513
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 318  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||||| | ||||| ||||  | | ||| |||||||| || |||||| |   ||||    
T  29443366 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttac-tttg--gctgaatcgtgtttcagtttacctttgagagcttt 29443462  T
Q  319 gatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 369  Q
    || |  |||| ||||||| || ||||||||||  ||||||||| |||||||    
T  29443463 gaggattttaggttattcgagcgatagaagtatggttctgttgcaagtaga 29443513  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 29453349 - 29453395
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgt 265  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||    
T  29453349 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt 29453395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 29423362 - 29423313
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||| | |||||||||||||||| |||| |||| |||||||||    
T  29423362 ttgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa 29423313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 29467825 - 29467874
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||| | |||||||||||||||| |||| |||||||| |||||    
T  29467825 ttgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaa 29467874  T

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Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 4605 - 4519
Alignment:
Q  179 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| |||||||||| | | ||||||||||||||    
T  4605 tgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaa 4519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 41966750 - 41966799
Alignment:
Q  219 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 268  Q
    ||||||||||||| |||||||||||| ||| |||| |||| |||||||||    
T  41966750 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaa 41966799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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