View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_high_22 (Length: 430)

Name: NF0526_high_22
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_high_22
NF0526_high_22
[»] chr7 (17 HSPs)
chr7 (66-419)||(48082543-48082885)
chr7 (71-131)||(34118006-34118066)
chr7 (71-131)||(45533251-45533311)
chr7 (71-146)||(28677384-28677459)
chr7 (75-146)||(9979871-9979942)
chr7 (71-138)||(10007643-10007710)
chr7 (71-138)||(36245443-36245510)
chr7 (88-138)||(41863665-41863715)
chr7 (71-138)||(4925905-4925972)
chr7 (71-138)||(8566148-8566215)
chr7 (71-138)||(30869253-30869320)
chr7 (72-138)||(11668083-11668149)
chr7 (90-138)||(2523856-2523904)
chr7 (74-146)||(10462383-10462455)
chr7 (71-131)||(40142840-40142900)
chr7 (74-122)||(47942907-47942955)
chr7 (74-122)||(47948337-47948385)
[»] chr8 (9 HSPs)
chr8 (71-138)||(8803242-8803309)
chr8 (71-138)||(35149735-35149802)
chr8 (71-138)||(5031478-5031545)
chr8 (74-138)||(883688-883752)
chr8 (71-138)||(1223137-1223204)
chr8 (74-128)||(42123036-42123090)
chr8 (89-138)||(24822808-24822857)
chr8 (66-146)||(8453656-8453736)
chr8 (90-146)||(32597584-32597640)
[»] chr4 (15 HSPs)
chr4 (71-146)||(3162901-3162976)
chr4 (72-138)||(9894639-9894705)
chr4 (71-146)||(23226956-23227031)
chr4 (71-136)||(28020544-28020609)
chr4 (71-147)||(42670769-42670845)
chr4 (71-138)||(696417-696484)
chr4 (71-138)||(764715-764782)
chr4 (71-142)||(4386146-4386217)
chr4 (71-146)||(44111812-44111887)
chr4 (71-119)||(17284802-17284850)
chr4 (90-138)||(19150672-19150720)
chr4 (71-138)||(44061455-44061521)
chr4 (71-138)||(48361066-48361133)
chr4 (71-138)||(53658431-53658498)
chr4 (71-141)||(50121448-50121518)
[»] chr3 (11 HSPs)
chr3 (71-138)||(35099122-35099189)
chr3 (71-131)||(25910258-25910318)
chr3 (71-146)||(43343447-43343522)
chr3 (71-144)||(44518044-44518117)
chr3 (109-141)||(44593212-44593244)
chr3 (71-122)||(7136823-7136874)
chr3 (71-136)||(12064976-12065041)
chr3 (72-117)||(25954090-25954135)
chr3 (90-138)||(21662900-21662948)
chr3 (90-138)||(53441993-53442041)
chr3 (72-144)||(54537451-54537523)
[»] chr5 (7 HSPs)
chr5 (71-146)||(21488350-21488425)
chr5 (71-138)||(18718252-18718319)
chr5 (72-139)||(22101921-22101988)
chr5 (71-128)||(11931994-11932051)
chr5 (72-131)||(26313332-26313391)
chr5 (71-122)||(36286126-36286177)
chr5 (88-146)||(1138301-1138359)
[»] chr1 (8 HSPs)
chr1 (74-138)||(7375539-7375603)
chr1 (71-131)||(15342958-15343018)
chr1 (80-138)||(47912891-47912948)
chr1 (71-138)||(23923564-23923631)
chr1 (72-138)||(38040344-38040410)
chr1 (74-138)||(24305735-24305799)
chr1 (90-138)||(26924227-26924275)
chr1 (74-138)||(38738001-38738065)
[»] chr2 (15 HSPs)
chr2 (71-137)||(32457280-32457346)
chr2 (68-138)||(38983063-38983133)
chr2 (71-146)||(12873729-12873804)
chr2 (89-146)||(5281263-5281319)
chr2 (72-128)||(4410845-4410901)
chr2 (72-144)||(29988900-29988972)
chr2 (74-142)||(33824360-33824428)
chr2 (74-138)||(34447573-34447637)
chr2 (71-146)||(9152446-9152521)
chr2 (90-141)||(12962716-12962767)
chr2 (71-138)||(28249000-28249067)
chr2 (71-138)||(30761392-30761459)
chr2 (112-146)||(11363004-11363038)
chr2 (89-146)||(41153196-41153253)
chr2 (90-138)||(38554544-38554592)
[»] chr6 (5 HSPs)
chr6 (71-138)||(2230416-2230483)
chr6 (71-114)||(9077624-9077667)
chr6 (68-146)||(17705926-17706004)
chr6 (71-138)||(17265788-17265855)
chr6 (68-146)||(2972170-2972248)
[»] scaffold0767 (1 HSPs)
scaffold0767 (73-146)||(3729-3802)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 66 - 419
Target Start/End: Complemental strand, 48082885 - 48082543
Alignment:
Q  66 tatttgtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcggaaaatataatttaaattcat 165  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||| | |||| ||||||||||||||||    
T  48082885 tatttgtctatattctacacatgatacattaattacacaatgaatctaaaaagtcaactttttcttataaataagacccgaaagtataatttaaattcat 48082786  T
Q  166 atatgaataacgtgttataaaagtacgttatttctttttctaattcaattcgcaaaagacaaatagcttcattctgaaatgactaagttgtgtttgaata 265  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |          ||||||| ||| |||||||||||||||||||||| ||||||||||    
T  48082785 atatgaataacgtgttataaaagtacgttatttctttttttaaat----------aagacaactagtttcattctgaaatgactaagttatgtttgaata 48082696  T
Q  266 ggtggtnnnnnnntgtaattcaatagaatggtgtttaatattttaaaattgatgttatatcttccataatataccactaatacaatgtacctaaaaaaga 365  Q
    ||||||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48082695 ggtggtaaaaaa-tgtaattcaatataatggtgtttaatattttaaaattgatgttatatcttccataatataccactaatacaatgtacctaaaaaaga 48082597  T
Q  366 ttaaggtgtaattttttgaatttttatttcctctgtaactgttatagtagtatt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48082596 ttaaggtgtaattttttgaatttttatttcctctgtaactgttatagtagtatt 48082543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 34118006 - 34118066
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  34118006 gtctatattctagacaagatacattaattacacaatgaatttaaaaagtcaactttttctt 34118066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 45533311 - 45533251
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  45533311 gtctatattctagacaagatacattaattacataatgaatctaaaaagtcaattttttctt 45533251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 28677384 - 28677459
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||||||| ||||||| ||||||  ||||||| ||||||||||| |||||||| |||||| |||||||    
T  28677384 gtctatattctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttataaataggatcgga 28677459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 9979871 - 9979942
Alignment:
Q  75 atattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||| ||||||| ||||||  ||||||| ||||||||||| |||||||| |||||||| |||||    
T  9979871 atattctagacaagatacatgaattactcaataaatctaaaaagtcaaatttttcttataaataagttcgga 9979942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 10007643 - 10007710
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||| ||| ||||||||||||| | ||| ||| |||||||||||||||||||| ||||||    
T  10007643 gtctatattctacacaagatacattaattatacaatgaatctaaaaagtcaactttttcttataaata 10007710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 36245443 - 36245510
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||| ||||||  ||| ||| ||||||||||| |||||||| ||||||    
T  36245443 gtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaattttttcttataaata 36245510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 41863665 - 41863715
Alignment:
Q  88 gatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| ||||||    
T  41863665 gatacattaattacacaatgaatttaaaaagtcaattttttcttataaata 41863715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 4925972 - 4925905
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||| |||||| | ||||| |||||| |||| ||| ||||||||||| |||||||| ||||||    
T  4925972 gtctatattttagacaagttacatcaattacttaatgaatctaaaaagtcaaatttttcttataaata 4925905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 8566148 - 8566215
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||| ||||||  ||| ||| |||||| |||| |||||||| ||||||    
T  8566148 gtctatattctagacaagatacatcaattactcaatgaatctaaaaaatcaaatttttcttataaata 8566215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 30869253 - 30869320
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||| ||||||  ||| ||| |||||||||||  ||||||| ||||||    
T  30869253 gtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaaaattttcttataaata 30869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 11668083 - 11668149
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||| ||||||| |||||   ||| ||| ||||||||||| |||||||| ||||||    
T  11668083 tctatattctagacaagatacatcaattaatcaatgaatgtaaaaagtcaaatttttcttataaata 11668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 2523856 - 2523904
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||  ||| ||| |||||||||||||||||||| ||||||    
T  2523856 tacattaattactcaatgaatctaaaaagtcaactttttcttataaata 2523904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 10462455 - 10462383
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||| |||||| ||||||| ||| ||  ||| ||| ||||||||||  |||||||| ||||||||||||||    
T  10462455 tatattttagacaagatacatcaatcactcaatgaatctaaaaagtcacatttttcttataaataagatcgga 10462383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 40142840 - 40142900
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||| ||| ||| ||||||||||||| | ||||||| |||||| |||| ||||||||    
T  40142840 gtctatatcctaaacaagatacattaattatacaataaatctaaaaaatcaattttttctt 40142900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 47942907 - 47942955
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaa 122  Q
    |||||| ||||||  ||||||||||||  ||||||||||||||||||||    
T  47942907 tatattttagacaaaatacattaattatttaataaatttaaaaagtcaa 47942955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 47948337 - 47948385
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaa 122  Q
    |||||| ||||||  ||||||||||||  ||||||||||||||||||||    
T  47948337 tatattttagacaaaatacattaattatttaataaatttaaaaagtcaa 47948385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 8803309 - 8803242
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  8803309 gtctatattctagacaagatacattaattacataataaatataaaaagttaactttttcttgtaaata 8803242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 35149735 - 35149802
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||| ||||||    
T  35149735 gtctatattctagacaagatacattaattacacaataaatctaaaaaatcaactttttcttataaata 35149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 5031545 - 5031478
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||| |||||| |||| |||||||||||| || |||||||| ||||||    
T  5031545 gtctatattctagacaagatacatcaattacttaatgaatttaaaaagttaaatttttcttataaata 5031478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 883688 - 883752
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||| ||||||  ||| |||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  883688 tatattttagacaaaatatattaattacacaatcaatctaaaaagtcaactttttcttataaata 883752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 1223204 - 1223137
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| ||||||||||  |||||||| ||||||    
T  1223204 gtctatatttttgacaagatacattaattacacaatgaatctaaaaagtcacttttttcttataaata 1223137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 42123036 - 42123090
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaacttttt 128  Q
    ||||||||||||| ||||||||||||||  ||| ||| ||||||||||| |||||    
T  42123036 tatattctagacaagatacattaattactcaatgaatctaaaaagtcaatttttt 42123090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 24822808 - 24822857
Alignment:
Q  89 atacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||| | ||||||| ||||||||||| |||||||| ||||||    
T  24822808 atacattaattatacaataaatctaaaaagtcaattttttcttataaata 24822857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 8453656 - 8453736
Alignment:
Q  66 tatttgtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||| ||||||||||||||| |||| || ||||||  |||  || |||||| |||| |||||||| |||||| |||||||    
T  8453656 tatttatctatattctagacaagatatatcaattactcaatgtatctaaaaaatcaaatttttcttataaataggatcgga 8453736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 32597584 - 32597640
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||||||  ||| ||||| |||||| ||||||||||| ||||||||| ||||    
T  32597584 tacattaattactcaatgaattttaaaagttaactttttcttataaataagaccgga 32597640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 3162976 - 3162901
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||||||| |||| |||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||    
T  3162976 gtctatattctagacaagatatattaattacacaatgaatttaaaaagtcaattttttcttataaataagaccgga 3162901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 9894705 - 9894639
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  9894705 tctatattctagacaagatacattaataacataatgaatctaaaaagtcaactttttcttataaata 9894639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 23227031 - 23226956
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||| || |||||| ||||||||||||||||||| ||| ||||||||||| |||||||| ||||||| ||||||    
T  23227031 gtctattttttagacaagatacattaattacataatgaatctaaaaagtcaattttttcttataaataaaatcgga 23226956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 28020544 - 28020609
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaa 136  Q
    |||||||||||| ||   ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  28020544 gtctatattctatactaaatacattaattacttaataaatttaaaaagtcaactttttcttataaa 28020609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 42670845 - 42670769
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcggaa 147  Q
    |||||||||||| ||  ||||||||||||||| ||| |||  ||||||| ||||||||||| |||||| ||||||||    
T  42670845 gtctatattctaaacgagatacattaattacacaatgaatcaaaaaagttaactttttcttataaataggatcggaa 42670769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 696417 - 696484
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||| ||| ||||||||||||| ||||||||| | |||| | ||||||||||| ||||||    
T  696417 gtctatattctaaacaagatacattaattatataataaatcttaaaaattaactttttcttataaata 696484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 764715 - 764782
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||| ||| ||||||||||||| ||||||||| | |||| | ||||||||||| ||||||    
T  764715 gtctatattctaaacaagatacattaattatataataaatcttaaaaattaactttttcttataaata 764782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 4386217 - 4386146
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagat 142  Q
    ||||||||| |||| |  |||||| |||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  4386217 gtctatattgtagataaaatacatcaattacttaatgaatttaaaaagtcaaatttttcttataaataagat 4386146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 44111812 - 44111887
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||| | | ||||||| ||||||  ||| ||| |||||||||||||||||||| ||||||||| ||||    
T  44111812 gtctatattctaaagaagatacatcaattactcaatgaatctaaaaagtcaactttttcttataaataagaccgga 44111887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 17284802 - 17284850
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagt 119  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||||||||    
T  17284802 gtctatattctagacaagatacatcaattatacaataaatttaaaaagt 17284850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 19150720 - 19150672
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||  ||||||| |||||||||||||||||||| ||||||    
T  19150720 tacattaattactcaataaatctaaaaagtcaactttttcttataaata 19150672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 44061455 - 44061521
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| |||||| |||||||| ||| |||||||||| || | |||||||| ||||||    
T  44061455 gtctatattctagacaagatacactaattacacaatgaatttaaaaa-tcgattttttcttataaata 44061521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 48361133 - 48361066
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||||  |||||| ||||||  ||| ||| ||||||||||| |||||||| ||||||    
T  48361133 gtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaaatttttcttataaata 48361066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 53658431 - 53658498
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||||  |||||||| ||| | ||||||| |||||| | ||||||||||| ||||||    
T  53658431 gtctatattctagacaaaatacattagttatacaataaatctaaaaaattaactttttcttataaata 53658498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 50121518 - 50121448
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataaga 141  Q
    |||||||| ||||||| ||||||| ||| |   ||||||| ||||||||||| |||||||| |||||||||    
T  50121518 gtctatatactagacaagatacatcaatcattcaataaatctaaaaagtcaaatttttcttataaataaga 50121448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 35099122 - 35099189
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  35099122 gtctatattctagacaagatatattaattacacaataaatttaaaaggtcaactttttcttataaata 35099189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 25910258 - 25910318
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||||||| ||   |||||||||||||  ||||||||||||||||||||||||||||    
T  25910258 gtctatattctacaccaaatacattaattactcaataaatttaaaaagtcaactttttctt 25910318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 43343522 - 43343447
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||||||||   ||||||||||||||  ||| ||| ||||||||||| |||||||| |||||| |||||||    
T  43343522 gtctatattctagagtagatacattaattacgcaattaatctaaaaagtcaattttttcttataaatatgatcgga 43343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 44518117 - 44518044
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcg 144  Q
    ||||||||| |||||| ||||||||||||||  ||| ||| |||||||||||  ||||||| |||||| |||||    
T  44518117 gtctatattttagacaagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaataggatcg 44518044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 44593244 - 44593212
Alignment:
Q  109 atttaaaaagtcaactttttcttgtaaataaga 141  Q
    |||||||||||||||||||||||||||||||||    
T  44593244 atttaaaaagtcaactttttcttgtaaataaga 44593212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 7136823 - 7136874
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaa 122  Q
    |||||||||||| | | |||||||||||||| ||||||||||||||| ||||    
T  7136823 gtctatattctatagaagatacattaattacttaataaatttaaaaattcaa 7136874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 12064976 - 12065041
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaa 136  Q
    |||||||||||| ||   ||| ||||||||| |||| ||||||||||||||| |||||||| ||||    
T  12064976 gtctatattctatactaaatatattaattacttaatgaatttaaaaagtcaattttttcttataaa 12065041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 25954090 - 25954135
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaa 117  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||||||    
T  25954090 tctatattctagacaagatacattaattactcaatgaatttaaaaa 25954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 21662948 - 21662900
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||  ||| ||| |||||||||||||||||||| ||||||    
T  21662948 tacattaattactcaatgaatctaaaaagtcaactttttcttataaata 21662900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 53441993 - 53442041
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||   ||| |||||||||||||||||||||||| ||||||    
T  53441993 tacattaattattcaatgaatttaaaaagtcaactttttcttataaata 53442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 54537523 - 54537451
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcg 144  Q
    ||||||||||||||  ||||||| ||||||  ||| ||| | ||||||||| |||||||| |||||| |||||    
T  54537523 tctatattctagactagatacatcaattactcaatgaatcttaaaagtcaaatttttcttataaataggatcg 54537451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 21488350 - 21488425
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||||||||||  |||||||||||||||||| | |||||||| | ||||||||||| |||||| |||||||    
T  21488350 gtctatattctagacaaaatacattaattacataatgagtttaaaaaattaactttttcttataaataggatcgga 21488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 18718319 - 18718252
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||| || || |||||||| ||||||    
T  18718319 gtctatattctagacaagatacattaattactcaataaatttaaaatgttaaatttttcttataaata 18718252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 22101988 - 22101921
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataa 139  Q
    |||||||| |||||| ||||||||||||||| ||| ||| |||||| |||| |||||||| |||||||    
T  22101988 tctatattttagacaagatacattaattacacaatgaatctaaaaaatcaaatttttcttataaataa 22101921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 11932051 - 11931994
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaacttttt 128  Q
    ||||||||| |||||| ||||||||||||||| ||| ||| ||||||||||| |||||    
T  11932051 gtctatattttagacaagatacattaattacacaatgaatctaaaaagtcaatttttt 11931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 26313332 - 26313391
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||| || ||| ||||  |||||||||||||||||||||||||| || ||||||||    
T  26313332 tctatattgtaaacaagatatgttaattacataataaatttaaaaagtaaattttttctt 26313391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 36286126 - 36286177
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaa 122  Q
    |||||||||||||||||||||||| ||||||  ||| ||| |||||||||||    
T  36286126 gtctatattctagacatgatacatcaattactcaattaatctaaaaagtcaa 36286177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 1138301 - 1138359
Alignment:
Q  88 gatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||||  |||| |||||||||| |||| |||||||| |||||| |||||||    
T  1138301 gatacattaattatttaatgaatttaaaaaatcaattttttcttataaatatgatcgga 1138359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 7375539 - 7375603
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |||||||| ||||||    
T  7375539 tatattctagacaagatacattaattacacaatgaatctaaaaagtcaattttttcttataaata 7375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 15343018 - 15342958
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttctt 131  Q
    |||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||||    
T  15343018 gtctatattctagacaagatacattaattacacaatgaatctaaaaattcaactttttctt 15342958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 47912891 - 47912948
Alignment:
Q  80 ctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||| ||||||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  47912891 ctagacaagatacattaattatacaataaatttaaaaagtcaa-tttttcttataaata 47912948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 23923631 - 23923564
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||||  |||||||||||||  ||| ||| |||||| |||| |||||||| ||||||    
T  23923631 gtctatattctagacaatatacattaattactcaatgaatctaaaaattcaaatttttcttataaata 23923564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 38040344 - 38040410
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||| ||||||| |||||   ||| ||| ||||||||||| |||||||| ||||||    
T  38040344 tctatattctagacaagatacatcaattaatcaatgaatctaaaaagtcaaatttttcttataaata 38040410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 24305735 - 24305799
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||| ||| ||||||| ||||||  |||||||||||||| | || |||||||| ||||||    
T  24305735 tatattctatacaagatacatcaattactcaataaatttaaaaaattaaatttttcttctaaata 24305799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 26924275 - 26924227
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||| ||  ||| |||||||||||||||||||||||| ||||||    
T  26924275 tacattaatgactcaatgaatttaaaaagtcaactttttcttataaata 26924227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 38738001 - 38738065
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||| ||||||| ||||||  ||| ||| |||||||| || |||||||| ||||||    
T  38738001 tatattctagacaagatacatcaattactcaatgaatctaaaaagttaaatttttcttataaata 38738065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 32457280 - 32457346
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaat 137  Q
    |||||||||||||||| ||||||| |||||| |||| ||| ||||||||||| |||||||| |||||    
T  32457280 gtctatattctagacaagatacatcaattacttaatgaatctaaaaagtcaaatttttcttataaat 32457346  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 38983063 - 38983133
Alignment:
Q  68 tttgtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||||||||| ||||||| ||||||| ||| ||| |||||| |||||||||| || ||||||    
T  38983063 tttgtctatattctagacaagatacatcaattacacaatgaatctaaaaaatcaacttttttttataaata 38983133  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 12873804 - 12873729
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||| ||   ||||||||||||| |||| ||| |||||||||||||||||||| |||| | |||||||    
T  12873804 gtctatattctataccaaatacattaattacttaatgaatctaaaaagtcaactttttcttataaaaaggatcgga 12873729  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 5281263 - 5281319
Alignment:
Q  89 atacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||||| ||||| | |||||||||||||||||||| |||||| |||||||    
T  5281263 atacattaattacaaaataa-tataaaaagtcaactttttcttataaatatgatcgga 5281319  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 4410845 - 4410901
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaacttttt 128  Q
    |||||||| || ||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  4410845 tctatattttaaacaagatacattaattacacaatgaatctaaaaagtcaacttttt 4410901  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 29988972 - 29988900
Alignment:
Q  72 tctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcg 144  Q
    |||||||||||||||  ||| |||||||||| ||| ||| |||||| |||| ||||| || ||||||||||||    
T  29988972 tctatattctagacaaaatatattaattacacaatgaatataaaaaatcaatttttttttataaataagatcg 29988900  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 33824428 - 33824360
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagat 142  Q
    |||||| |||||| |||| || ||||||  ||| ||||||||||||||| |||||||| ||||||||||    
T  33824428 tatattttagacaagatatatcaattactcaatgaatttaaaaagtcaaatttttcttataaataagat 33824360  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 34447573 - 34447637
Alignment:
Q  74 tatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||| |||||| |||||||| |||||| ||| ||| |||||| ||||||||||||| ||||||    
T  34447573 tatattttagacaagatacattgattacacaatgaatctaaaaaatcaactttttcttataaata 34447637  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 9152446 - 9152521
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||| |||||  ||||||| ||||||  ||| ||| ||||||||||| | |||||||||||||||| ||||    
T  9152446 gtctatattttagactagatacatcaattactcaatgaatctaaaaagtcaattgtttcttgtaaataagaccgga 9152521  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 12962767 - 12962716
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaataaga 141  Q
    ||||||||||||  ||| ||| |||||||||||||||||||| |||||||||    
T  12962767 tacattaattactcaatgaatctaaaaagtcaactttttcttataaataaga 12962716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 28249000 - 28249067
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||| ||   ||||||||||||  |||| ||| |||||||||||||||||||| ||||||    
T  28249000 gtctatattctataccaaatacattaattatttaatgaatctaaaaagtcaactttttcttataaata 28249067  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 30761459 - 30761392
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| |||| |||||||||  ||| ||| ||||||||||| | |||||| ||||||    
T  30761459 gtctatattctagacaagataaattaattactcaatgaatgtaaaaagtcaaatgtttcttataaata 30761392  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 11363038 - 11363004
Alignment:
Q  112 taaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||||||||| |||||||||||||||||||    
T  11363038 taaaaagtcaactttctcttgtaaataagatcgga 11363004  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 41153196 - 41153253
Alignment:
Q  89 atacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||| ||||||  ||| ||| |||||||||||||||||||| |||||| |||||||    
T  41153196 atacatcaattactcaatgaatctaaaaagtcaactttttcttataaataggatcgga 41153253  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 38554544 - 38554592
Alignment:
Q  90 tacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    ||||||||||||  ||| |||||||||||| ||||||||||| ||||||    
T  38554544 tacattaattactcaatgaatttaaaaagttaactttttcttataaata 38554592  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 2230416 - 2230483
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||||||||||  ||| ||| |||||||||||  ||||||| ||||||    
T  2230416 gtctatattctagacaagatacattaattactcaatgaatctaaaaagtcaaagttttcttataaata 2230483  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 9077667 - 9077624
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaa 114  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  9077667 gtctatattctagacaagatacattaattacacaataaatttaa 9077624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 17705926 - 17706004
Alignment:
Q  68 tttgtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||| || ||| ||||||| ||| ||  ||| |||| |||||||||| |||||||| ||||||||||||||    
T  17705926 tttgtctatattttaaacaagatacatcaatcacgcaatcaattcaaaaagtcaattttttcttataaataagatcgga 17706004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 17265788 - 17265855
Alignment:
Q  71 gtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaata 138  Q
    |||||||||||||||| ||||||| ||||||   || |||||||||| |||| |||||||| ||||||    
T  17265788 gtctatattctagacaagatacatcaattactcgatgaatttaaaaaatcaaatttttcttataaata 17265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 2972248 - 2972170
Alignment:
Q  68 tttgtctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    |||||||||||| |||| | ||||||  ||||||  ||||||| ||||||||||| ||| |||| ||||||||| ||||    
T  2972248 tttgtctatattttagataagatacaccaattactcaataaatctaaaaagtcaaatttctcttataaataagaccgga 2972170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 3802 - 3729
Alignment:
Q  73 ctatattctagacatgatacattaattacataataaatttaaaaagtcaactttttcttgtaaataagatcgga 146  Q
    ||||||||||||||  |||||| ||||||  ||||||| ||||||||||| |||||||| || |||||| ||||    
T  3802 ctatattctagacaaaatacatcaattactcaataaatgtaaaaagtcaaatttttcttatatataagaccgga 3729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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