View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_high_29 (Length: 373)
Name: NF0526_high_29
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_29 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43435453 - 43435801
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43435453 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtg |
43435552 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435553 |
tcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
43435652 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagct |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
43435653 |
ggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggtagct |
43435752 |
T |
|
| Q |
301 |
aagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43435753 |
aagaaattcgagtcatcagggtatactctttccaaggcagtctatgatg |
43435801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43443647 - 43443995
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43443647 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtg |
43443746 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43443747 |
tcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
43443846 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagct |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
43443847 |
ggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataagccgaatttggatttagttttcagggtagct |
43443946 |
T |
|
| Q |
301 |
aagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43443947 |
aagaaattcgagtcatcagggtatactctttccaaggcagtctatgatg |
43443995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43426948 - 43427296
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43426948 |
tatctacagaatacagtgacttataatgcagttgctagagttcttcctagaatggagtcaattgagaagttttggagtattcttgaggagatgaagagtg |
43427047 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||| ||||||||||| |
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| T |
43427048 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagctttacgagcatatgat |
43427147 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagct |
300 |
Q |
| |
|
|||||||||||||||||| ||| ||| || ||||| |||||||||||||| | ||| ||| |||||||| ||||||||||||||||||||||| || |
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|
| T |
43427148 |
ggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatctacaaaggataagccagatttggatttagttttcagggtaact |
43427247 |
T |
|
| Q |
301 |
aagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
349 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43427248 |
aagaaatttgagtcaacagggtatactctttccaaggcagtctatgatg |
43427296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43422370 - 43422595
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
|||||||| ||| | |||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43422370 |
tatcaacataatgctgtgacttacaatgcagttgctagagttcttgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtg |
43422469 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
| | |||||||||| |||||||||| || |||||| | | |||| || ||||||| |||||||| |||||||||| |||||||| |||| |||||| |
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|
| T |
43422470 |
tgaattatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagctttacgagcttatgat |
43422569 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttc |
226 |
Q |
| |
|
|||| |||||||| ||||||| |||| |
|
|
| T |
43422570 |
ggatggttcatatgagccatcggttc |
43422595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 20933 - 21264
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
20933 |
tatcaacggaatacagttacttataatgcagttgctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagacgaagagtg |
21032 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21033 |
tctgtcatgaattggag-----------------gatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgat |
21115 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
21116 |
ggatagttcatataagccatcagttctggattgcattatgcttttaaagagcacatctgcaagcgataagctggatttggatttagttttcagggtagct |
21215 |
T |
|
| Q |
301 |
aagaaatttgagtcatcagggtatactctttccaaggcagtctatgatg |
349 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
21216 |
aagaaattcgagtaaacagggtatactctttccaaggcagtctatgatg |
21264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 40186346 - 40186008
Alignment:
| Q |
1 |
tatcaacagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtg |
100 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||||| ||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40186346 |
tatcaacataataccgtgacttacaattatgttgcaagagttcttgctaagatggactcaattgaggagttttggagtatc---gaggagatgaagagtg |
40186250 |
T |
|
| Q |
101 |
tcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgat |
200 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
40186249 |
tcggtcatgaattggatctcaatacttccataaagatatcgaggcagcttcaagagaataggatgatggacgg---------gcttcatgagcatatgat |
40186159 |
T |
|
| Q |
201 |
ggatagttcatataagccatcagttccagactgcatcatgcttttaaagagcatctctgcaagctataagccaaatttggatttagttttcagggtagct |
300 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||||||||||| |||| ||| |||| || ||||| |||||||||| |||||||||||||| |
|
|
| T |
40186158 |
ggatagttcatacaagccatcagttctggactgcattatgcttttaaagaacatcgctgaaagcgatgagccaggtttggatttatttttcagggtagct |
40186059 |
T |
|
| Q |
301 |
aagaaatttgagtcatca--gggtatactctttccaaggcagtctatgatg |
349 |
Q |
| |
|
|| ||||| ||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
40186058 |
aacaaattcgagtcgacagggggtatactctttccaaggaagtctatgatg |
40186008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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