View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_high_45 (Length: 266)
Name: NF0526_high_45
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 43237111 - 43237310
Alignment:
| Q |
22 |
aaacaaaggggaaccatggtgtagattcatcaccatgtcattctcctcatcggcttctcttatgctctaccaacatagctaagatgcaaattttcgtatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43237111 |
aaacaaaggggaaccatggtgtagattcatcaccatgtcattctcctcatcg-cttctcttatgctctaccaacatagctaagatgcaaattttcgtatt |
43237209 |
T |
|
| Q |
122 |
caaattgaaatatgagtttgacgaaatcggagatgggttttgagtattctgaaatcgaatgtgaatttttctcaggtctgcaacttcatggataagccat |
221 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43237210 |
taaactgaaatatgggtttgacgaaatcggagatgggttttgagtattctgaaatcgaatgtgaatttttctcaggtctgcaacttcatggataagccat |
43237309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 7981757 - 7981558
Alignment:
| Q |
22 |
aaacaaaggggaaccatggtgtagattcatcaccatgtcattctcctcatcggcttctcttatgctctaccaacatagctaagatgcaaattttcgtatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7981757 |
aaacaaaggggaaccatggtgtagattcatcaccatgtcattctcctcatcg-cttctcttatgctctaccaacatagctaagatgcaaattttcgtatt |
7981659 |
T |
|
| Q |
122 |
caaattgaaatatgagtttgacgaaatcggagatgggttttgagtattctgaaatcgaatgtgaatttttctcaggtctgcaacttcatggataagccat |
221 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7981658 |
caaattgaaatatgggtttgatgaaatcggagatgggttttgagtattctgaaatcgaatgtgaatttttctcaggtctgcaacttcatggagcagccat |
7981559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 172 times since January 2019
Visitors: 3674