View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_high_5 (Length: 605)
Name: NF0526_high_5
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_5 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Original strand, 45548859 - 45549450
Alignment:
| Q |
11 |
cagagaggtgtggcacaaactgatcaatatcacggcttccagaagaaggagggtattcagtactgtcagcgacaggtggctggatttttggttctgtggt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45548859 |
cagagaggtgtggcacaaactgatcaatatcacggcttccagaagaaggagggtattcagtactgtcagcaacaggtggctggatttttggttctgtggt |
45548958 |
T |
|
| Q |
111 |
aggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttatttcaccacttcctgtaaaccaacatacatgaaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45548959 |
aggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttacttcaccacttcctgtaaaccaacatacatgaaat |
45549058 |
T |
|
| Q |
211 |
tattatctgtgtaaataaattgttagggtccggggatcttagcaagagtaaatttcacattttatcttcttataccaaaaaatggaagagtaaattgtct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45549059 |
tattatctgtgtaaataaattgttagggtccggggatcttagcaagagtaaatttcacatttta---tcttataccaaaaaatggaagagtaaattgtct |
45549155 |
T |
|
| Q |
311 |
tgtattattccatttattctattttaatttgactatacttacatctctaagttaaataccattgcatgccgctgtgtttggtctaatggtgagtggttta |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45549156 |
tgtattattccatttattctattttaatttgactatacttacatctctaagttaaataccattgcatgccgctatgtttggtctaatggtgagtggttta |
45549255 |
T |
|
| Q |
411 |
ggtagtatgcatgagtttctaggttcaaacctcgttgcctctaagtttaaaagaaatggtcagtatcattggactgattaccagctttatttagatctcc |
510 |
Q |
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| T |
45549256 |
ggtagtatgcatgagtttctaggttcaaacctcgtcgcctctaagtttaaaagaaatggtaagtatcattggactgattaccagctttatttagatctcc |
45549355 |
T |
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| Q |
511 |
catcccaatcatgnnnnnnnncatcacaaggctgaacccaaaacctaaccttatttaagagattccagtccagtttcactgactaatttaatgtt |
605 |
Q |
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| T |
45549356 |
catcccaatcatgttttttttcatcacaaggctgaacccaaaacctaaccttatttaagagattccagtccagtttcactgactaatttaatgtt |
45549450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 45545062 - 45545171
Alignment:
| Q |
90 |
ctggatttttggttctgtggtaggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttatttcaccacttcct |
189 |
Q |
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| T |
45545062 |
ctggatttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggtgttatgtcttttatttcatcacttcct |
45545161 |
T |
|
| Q |
190 |
gtaaaccaac |
199 |
Q |
| |
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|||| ||||| |
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| T |
45545162 |
gtaagccaac |
45545171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 45550233 - 45550358
Alignment:
| Q |
90 |
ctggatttttggttctgtggtaggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttatttcaccacttcct |
189 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| | |||||||||||| ||||| || |
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| T |
45550233 |
ctggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttcatcactttct |
45550332 |
T |
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| Q |
190 |
gtaaaccaacatacatgaaattatta |
215 |
Q |
| |
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| T |
45550333 |
ggaagccaacacacatgaaagtatta |
45550358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 45549783 - 45549926
Alignment:
| Q |
11 |
cagagaggtgtggcacaaactgatcaatatcacggcttccagaagaaggagggtattcagtactgtcagcgacaggtggctggatttttggttctgtggt |
110 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| || ||||||||||||||| ||||| |||| ||||||||| ||| |||||||||| |
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| T |
45549783 |
cagagaagtgtggcacaaactgatcat------ggcttccaacagcaggagggtattcagt---gtcagtaacagatggctggatatttcgttctgtggt |
45549873 |
T |
|
| Q |
111 |
aggttttggctcat---catgcacattcattctctctagagattcctcaagtg |
160 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
45549874 |
aggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtg |
45549926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 493
Target Start/End: Original strand, 45545299 - 45545405
Alignment:
| Q |
385 |
tgtttggtctaatggtgagtggtttaggtagtatgcatgagtttctaggttcaaacctcgttgcctctaagtttaaaagaaatggtcagtatcattggac |
484 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||| |||||||||||| | || ||||||| | || ||||| || |
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| T |
45545299 |
tgtttggtctaatggtgagtggtttaggtggtatggacaagttcctaggttcaaacctcattgcctctaagtgttaa--aaatggtaaataccattgtac |
45545396 |
T |
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| Q |
485 |
tgattacca |
493 |
Q |
| |
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||||||||| |
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| T |
45545397 |
tgattacca |
45545405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 45544156 - 45544281
Alignment:
| Q |
87 |
tggctggatttttggttctgtggtaggttttggctcat---catgcacattcattctctctagagattcctcaagtgctgttgtttcttttatttcacca |
183 |
Q |
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|||||||||||||| ||| |||||||| ||||| |||| ||||||||||||||||||| |||||||||||||| | ||| | |||||| ||||| | |
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| T |
45544156 |
tggctggatttttgtttcagtggtaggatttggttcatcatcatgcacattcattctctcaagagattcctcaagcggtgtaatgtcttttgtttcatta |
45544255 |
T |
|
| Q |
184 |
cttcctgtaaaccaacatacatgaaa |
209 |
Q |
| |
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||| |||||| |||||| |||||||| |
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| T |
45544256 |
ctttctgtaagccaacacacatgaaa |
45544281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 1697522 - 1697576
Alignment:
| Q |
397 |
tggtgagtggtttaggtagtatgcatgagtttctaggttcaaacctcgttgcctc |
451 |
Q |
| |
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||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||||| |
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|
| T |
1697522 |
tggtgaggggtttgggtagtatgcacgaggttctaggttcaaaccttgttgcctc |
1697576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 605
Target Start/End: Original strand, 45545468 - 45545517
Alignment:
| Q |
557 |
aaccttatttaagagattccagtccagtttcact-gactaatttaatgtt |
605 |
Q |
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| T |
45545468 |
aaccttatttaagagatctcagtccagtttcactagattaatttaatgtt |
45545517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 19671152 - 19671100
Alignment:
| Q |
91 |
tggatttttggttctgtggtaggttttggctcatcatgcacattcattctctc |
143 |
Q |
| |
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||||||||||||||||| || ||||| ||||||||||||||||||||| |||| |
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| T |
19671152 |
tggatttttggttctgttgttggtttaggctcatcatgcacattcattatctc |
19671100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 36610184 - 36610142
Alignment:
| Q |
95 |
tttttggttctgtggtaggttttggctcatcatgcacattcat |
137 |
Q |
| |
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||||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
36610184 |
tttttggttatgttgtaggtttaggctcatcatgcacattcat |
36610142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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