View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_high_51 (Length: 256)
Name: NF0526_high_51
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 40738404 - 40738488
Alignment:
| Q |
121 |
aggaagtatagaattaattatctgttaacaatatataaaatcaatcttattattctttgtattttggtgaactaatttcaattta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40738404 |
aggaagtatagaattaattatctgttaacaatatataaaatcaatcttattattctttgtattttggtgaactaatttccattta |
40738488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 40738275 - 40738357
Alignment:
| Q |
2 |
tctaatttatttttgtgtttagatgacataaataccacgattttaatataatacatgacacagtttctaaagtttcatatatc |
84 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
40738275 |
tctaatttatttttgtgcttagatgacataaataccacgattttaatgtaatacatgacacagtttctaaagttccatatatc |
40738357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1227 times since January 2019
Visitors: 3665