View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_high_69 (Length: 240)
Name: NF0526_high_69
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 3776714 - 3776930
Alignment:
| Q |
11 |
aggaggagcagagagtgaaataggaag-tggaggag----cacagaggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggt |
105 |
Q |
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|||||||||| | |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3776714 |
aggaggagcacaaagtgaaataggaaggtggaggagagaacacgaaggggggaagagaaccggtggccgtgagatagagagaaagacgtcggtaggtggt |
3776813 |
T |
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| Q |
106 |
ggatggggtgagagaggcacgaagacagcaggttgtggccggatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
205 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3776814 |
ggatggggtgagagaggcacgaagacggcaggttgtggccgtatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtc |
3776913 |
T |
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| Q |
206 |
agagtggggttaggttg |
222 |
Q |
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|||||||||||| |||| |
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| T |
3776914 |
agagtggggttacgttg |
3776930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 42434860 - 42435076
Alignment:
| Q |
11 |
aggaggagcagagagtgaaataggaag-tggaggag----cacagaggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggt |
105 |
Q |
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|||||||||| ||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
42434860 |
aggaggagcacagaatgaaataggaaggtggaggagagaacacgaaggggggaagagaaccggtggccgtgagatagagaaaaagacgtcggtaggtggt |
42434959 |
T |
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| Q |
106 |
ggatggggtgagagaggcacgaagacagcaggttgtggccggatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
205 |
Q |
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| T |
42434960 |
ggatggggtgagagaggcatgaagacagcaggtggtggccggatgccggcagagacatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
42435059 |
T |
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| Q |
206 |
agagtggggttaggttg |
222 |
Q |
| |
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|||||||||||| |||| |
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| T |
42435060 |
agagtggggttacgttg |
42435076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 5830383 - 5830458
Alignment:
| Q |
53 |
gggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
128 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
5830383 |
gggggaagagaaccggtgtccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
5830458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 9618414 - 9618488
Alignment:
| Q |
54 |
ggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
9618414 |
ggggaagagaaccggtggccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
9618488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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