View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_high_72 (Length: 239)

Name: NF0526_high_72
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_high_72
NF0526_high_72
[»] chr5 (3 HSPs)
chr5 (9-239)||(32267784-32268018)
chr5 (9-230)||(41889116-41889341)
chr5 (9-235)||(41901095-41901325)
[»] chr4 (3 HSPs)
chr4 (7-99)||(10634134-10634226)
chr4 (148-238)||(547368-547458)
chr4 (67-104)||(53761480-53761517)
[»] chr3 (1 HSPs)
chr3 (70-236)||(514284-514454)
[»] chr6 (5 HSPs)
chr6 (31-93)||(10579461-10579523)
chr6 (114-179)||(6596562-6596627)
chr6 (67-99)||(6602905-6602937)
chr6 (67-99)||(7119506-7119538)
chr6 (67-99)||(7131984-7132016)
[»] chr1 (1 HSPs)
chr1 (168-238)||(17352116-17352186)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 32267784 - 32268018
Alignment:
Q  9 caacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----g 104  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    |    
T  32267784 caacaaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggag 32267883  T
Q  105 tacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattc 204  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  32267884 aacaaagaaggctgattctgtaagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgatcatctttc 32267983  T
Q  205 agaaaaacaacattttgaagatccaagtgttggaa 239  Q
    ||||||||| |||||||||||||||||||||||||    
T  32267984 agaaaaacagcattttgaagatccaagtgttggaa 32268018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 41889341 - 41889116
Alignment:
Q  9 caacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----g 104  Q
    ||||||||||||| ||||||||||| |||| |||||||| ||| | ||||||  ||||||||||||||||  ||| ||||||||| || ||||||    |    
T  41889341 caacaaaatccatcaaagatttagagctctttagactctattttccaatacacgtgtgttccattttgataacacaaagtgaaggacaattcttaagaag 41889242  T
Q  105 tacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattc 204  Q
    | ||||||| |||||||||||||| || ||||||||| |||| ||||||||| |||||||| ||||||| ||||||| |||||||||||||| || ||||    
T  41889241 tgcaaagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaaatcaccaagaaatgaagacaactccacaacatgtttatgattc 41889142  T
Q  205 agaaaaacaacattttgaagatccaa 230  Q
    |||||||||| |||||||||||||||    
T  41889141 agaaaaacaatattttgaagatccaa 41889116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 41901325 - 41901095
Alignment:
Q  9 caacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----ag 104  Q
    ||||||||| ||| |||||| |||||||||||||||||| ||||| ||||| | ||| |||||| ||||| |||| ||||||||| || ||| |    ||    
T  41901325 caacaaaattcatcaaagatctagaactctctagactctctttcccaatacctgtgtcttccatattgatatcaccaagtgaaggacaattcctaagaag 41901226  T
Q  105 tacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattc 204  Q
    |||||||||||||||| | |||| ||| |  |||  || ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||     
T  41901225 tacaaagaaggctgataccgtgaccatcgggcaactagccaagtttatagataccaaatcaccaagaaacgaagacatctccacaacatgttcatctttg 41901126  T
Q  205 agaaaaacaacattttgaagatccaagtgtt 235  Q
    ||||||||| |||||| ||||||||| ||||    
T  41901125 agaaaaacagcattttcaagatccaaatgtt 41901095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 10634226 - 10634134
Alignment:
Q  7 tccaacaaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagtt 99  Q
    ||||||||||||| | ||||| |||||| |||| | | ||||||||| |||| |  ||  ||||||||||||||||||||||||||| |||||    
T  10634226 tccaacaaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtt 10634134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 547368 - 547458
Alignment:
Q  148 tttatagattccaaatcaacaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttgga 238  Q
    |||||| | ||||||||| |||||||| ||||||  || | |||||||| || | ||| ||||||| ||||||||||||| || |||||||    
T  547368 tttataaactccaaatcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttgga 547458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 53761517 - 53761480
Alignment:
Q  67 ttccattttgatctcactaagtgaagggcagttcttag 104  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttag 53761480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 514454 - 514284
Alignment:
Q  70 cattttgatctcactaagtgaagggcagttctt----agtacaaagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatca 165  Q
    |||||||||||||||||||||||| ||||||||    ||| |||| |||| | | | ||||||||||||||| |   |||| ||||||||   ||||| |    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaaggataaatgtgtgagcattgaacatttgctcaagtttatagacaacaaatga 514355  T
Q  166 acaagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttg 236  Q
     |||||||| | ||||  ||||||||||||| |||||| || ||||   ||| |||||||| ||| |||||    
T  514354 ccaagaaacaatgacaaatccacaacatgttgatcattgaggaaaagggcatcttgaagattcaaatgttg 514284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10579523 - 10579461
Alignment:
Q  31 agaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 93  Q
    |||| |||||| ||||||| ||||||||  | ||| ||||||||||||||||||||| |||||    
T  10579523 agaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaagg 10579461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 6596627 - 6596562
Alignment:
Q  114 ggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaaga 179  Q
    |||||||||||||||| ||||||||||| | |  ||||||||  |||||||| |||||||| ||||    
T  6596627 ggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaaga 6596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 6602937 - 6602905
Alignment:
Q  67 ttccattttgatctcactaagtgaagggcagtt 99  Q
    ||||||||||||||||||||||||||| |||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtt 6602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 7119506 - 7119538
Alignment:
Q  67 ttccattttgatctcactaagtgaagggcagtt 99  Q
    ||||||||||| |||||||||||||||||||||    
T  7119506 ttccattttgaactcactaagtgaagggcagtt 7119538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 7131984 - 7132016
Alignment:
Q  67 ttccattttgatctcactaagtgaagggcagtt 99  Q
    ||||||||||| |||||||||||||||||||||    
T  7131984 ttccattttgaactcactaagtgaagggcagtt 7132016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 17352116 - 17352186
Alignment:
Q  168 aagaaacgaagacatctccacaacatgttcatcattcagaaaaacaacattttgaagatccaagtgttgga 238  Q
    |||||| ||||||| |||||||| ||||| |||| |||||||| || || ||||||||||| | |||||||    
T  17352116 aagaaatgaagacaactccacaaaatgttgatcactcagaaaaccagcagtttgaagatcctaatgttgga 17352186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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