View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_high_86 (Length: 217)
Name: NF0526_high_86
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_high_86 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 3776759 - 3776930
Alignment:
| Q |
28 |
aggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaagacagcaggttgtggccggatg |
127 |
Q |
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| T |
3776759 |
aggggggaagagaaccggtggccgtgagatagagagaaagacgtcggtaggtggtggatggggtgagagaggcacgaagacggcaggttgtggccgtatg |
3776858 |
T |
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| Q |
128 |
ccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtgagagtggggttaggttg |
199 |
Q |
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| T |
3776859 |
ccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtcagagtggggttacgttg |
3776930 |
T |
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Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 42434905 - 42435076
Alignment:
| Q |
28 |
aggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaagacagcaggttgtggccggatg |
127 |
Q |
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| T |
42434905 |
aggggggaagagaaccggtggccgtgagatagagaaaaagacgtcggtaggtggtggatggggtgagagaggcatgaagacagcaggtggtggccggatg |
42435004 |
T |
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| Q |
128 |
ccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtgagagtggggttaggttg |
199 |
Q |
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| T |
42435005 |
ccggcagagacatggtggagaaagaggagaggaaaagggtgagtggctgggagtgagagtggggttacgttg |
42435076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 5830383 - 5830458
Alignment:
| Q |
30 |
gggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
105 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
5830383 |
gggggaagagaaccggtgtccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
5830458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 9618414 - 9618488
Alignment:
| Q |
31 |
ggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
9618414 |
ggggaagagaaccggtggccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
9618488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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