View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_10 (Length: 559)
Name: NF0526_low_10
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 30 - 550
Target Start/End: Complemental strand, 33887759 - 33887239
Alignment:
| Q |
30 |
aaacgtttatgctataagctgcaagataagttttttatccaaagagggcctaattcaaagacacattctgttgtatttctttcattatgctctaactgtt |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887759 |
aaacgtttatgctattagctgcaagataagttttttatccaaagagggcctaattcaaagacacattctgttgtatttctttcattatgctctaactgtt |
33887660 |
T |
|
| Q |
130 |
gttaactcttatctttctgtctattcattgcaacatttatcacagatgattatttaaactcatgaccatgaataattattatttgaataattggtgtttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887659 |
gttaactcttatctttctgtctattcattgcaacatttatcacagatgattatttaaattcatgaccatgaataattattatttgaataattggtgtttc |
33887560 |
T |
|
| Q |
230 |
agattgcatgtgtcttgtctgtttcccaatcaaagaaggaaaataaaacaacattcatgattttctcacattgagttgaaatttatggagttgcatggtt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887559 |
agattgcatgtgtcttgtctgtttcccaatcaaagaaggaaaataaaacaacattcatgattttctcacattgagttgaaatttatggagttgcatggtt |
33887460 |
T |
|
| Q |
330 |
gtgttggccaaatgtttgaaactgagcttgttattcactttctcaaaaagatgagttcactcagcgtatcactttcgatcctattgcatggttgtgttgg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33887459 |
gtgttggccaaatgtttgaaactgagcttgttattcactttctcaaaaagatgagttcactcagcgtatcacttttgatcctattgcatggttgtgttgg |
33887360 |
T |
|
| Q |
430 |
ctatgatgatccttgctggttttcggctggaagaaacttgatttagaaggatcttcgtcgatggaacaacccaacttatatttctctagcacttatgttt |
529 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887359 |
ctttgatgatccttgctggttttcggctggaagaaacttgatttagaaggatcttcgtcgatggaacaacccaacttatatttctctagcacttatgttt |
33887260 |
T |
|
| Q |
530 |
aacttgattcagaagaataat |
550 |
Q |
| |
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||||||||||||||||||||| |
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| T |
33887259 |
aacttgattcagaagaataat |
33887239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 33890702 - 33890561
Alignment:
| Q |
34 |
gtttatgctataagctgcaagataagttttttatccaaagagggcctaattcaaagacacattctgttgtatttctttcattatgctctaactgttgtta |
133 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||| || ||| |||||||||||| |||||||||||| | ||| |
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| T |
33890702 |
gtttatgctataagctgcaaaataagttatttatccaaagagggtttaattcaaagtcacaatcagttctatttctttcatcatgctctaactgctatta |
33890603 |
T |
|
| Q |
134 |
actcttatctttctgtc-tattcattgcaacatttatcacag |
174 |
Q |
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|||||| |||||||||| | ||||| |||||||||||||||| |
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| T |
33890602 |
actcttgtctttctgtcattttcatagcaacatttatcacag |
33890561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 33892318 - 33892261
Alignment:
| Q |
427 |
tggctatgatgatccttgctggttttcggctggaagaaacttgatttagaaggatcttc |
485 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||| |
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| T |
33892318 |
tggctttgatgatcctta-tggttttcggctcaaagaaacttgattcagaaggatcttc |
33892261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 425973 - 426018
Alignment:
| Q |
36 |
ttatgctataagctgcaagataagttttttatccaaagagggccta |
81 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
425973 |
ttatgctataagctgcaaaataagttatttatccaaacagggccta |
426018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 25596024 - 25595980
Alignment:
| Q |
36 |
ttatgctataagctgcaagataagttttttatccaaagagggcct |
80 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| ||||||| |
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| T |
25596024 |
ttatgctataagctgcaagttaagttgtttatccaaacagggcct |
25595980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 4389859 - 4389818
Alignment:
| Q |
39 |
tgctataagctgcaagataagttttttatccaaagagggcct |
80 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
4389859 |
tgctataagctgcaaaataagttatttatccaaacagggcct |
4389818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 38105009 - 38105058
Alignment:
| Q |
30 |
aaacgtttatgctataagctgcaagataagttttttatccaaagagggcc |
79 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||| |||||||||| |||||| |
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| T |
38105009 |
aaacgcttacgctataagctgcaaaataagttgtttatccaaacagggcc |
38105058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 22539199 - 22539242
Alignment:
| Q |
36 |
ttatgctataagctgcaagataagttttttatccaaagagggcct |
80 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
22539199 |
ttatgctataacctgcaa-ataagttatttatccaaagagggcct |
22539242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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