View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_11 (Length: 542)
Name: NF0526_low_11
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 86 - 452
Target Start/End: Original strand, 33499800 - 33500166
Alignment:
| Q |
86 |
cgaagtccccagttgggtgatttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccat |
185 |
Q |
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| T |
33499800 |
cgaagtccccagttgggtgatttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccat |
33499899 |
T |
|
| Q |
186 |
cgattgatgatttggtcttgttgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacannnnnnngcttactgaattatgttatcat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33499900 |
cgattgatgatttggtcttgttgactttgatggaacatctgctcaggctaaagactgaagacttgcgcacatttttttgcttactgaattatgttatcat |
33499999 |
T |
|
| Q |
286 |
tgtgtttggttgtgagtgataattccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaa |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33500000 |
tgtgtttggttgtgagtgataattccaagcttaagcattcttttaataataaagaaattctttaatttgttggatatttcattgcaaatcacttggctaa |
33500099 |
T |
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| Q |
386 |
gttagctaatagacaacaatgatatttggagatcctctaactccccaacacacttcaacatcttcaa |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33500100 |
gttagctaatagacaacaatgatatttggagatcctctaactccccaacacacttcaacatcttcaa |
33500166 |
T |
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