View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_12 (Length: 535)

Name: NF0526_low_12
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_12
NF0526_low_12
[»] chr6 (19 HSPs)
chr6 (97-529)||(19177944-19178373)
chr6 (464-515)||(11015567-11015618)
chr6 (252-296)||(214466-214510)
chr6 (460-494)||(1806429-1806463)
chr6 (460-492)||(3108121-3108153)
chr6 (459-494)||(14227648-14227683)
chr6 (464-515)||(28076400-28076451)
chr6 (464-515)||(34439660-34439711)
chr6 (460-494)||(2442423-2442457)
chr6 (460-494)||(31100129-31100163)
chr6 (460-494)||(31452068-31452102)
chr6 (460-494)||(32731757-32731791)
chr6 (460-514)||(33453714-33453768)
chr6 (460-494)||(34233029-34233063)
chr6 (460-494)||(34903958-34903992)
chr6 (460-493)||(29823150-29823183)
chr6 (460-492)||(558360-558392)
chr6 (460-492)||(10856133-10856165)
chr6 (460-492)||(34685129-34685161)
[»] chr5 (27 HSPs)
chr5 (97-243)||(19190951-19191095)
chr5 (461-521)||(11063014-11063074)
chr5 (460-521)||(5382048-5382109)
chr5 (460-519)||(22977330-22977389)
chr5 (460-518)||(26699211-26699269)
chr5 (460-518)||(26968944-26969002)
chr5 (460-494)||(1711308-1711342)
chr5 (460-494)||(9587292-9587326)
chr5 (460-515)||(16474748-16474803)
chr5 (459-494)||(32382847-32382882)
chr5 (460-494)||(2236621-2236655)
chr5 (460-494)||(2671412-2671446)
chr5 (460-494)||(4221578-4221612)
chr5 (460-494)||(5591586-5591620)
chr5 (460-494)||(12713310-12713344)
chr5 (460-494)||(12774574-12774608)
chr5 (460-494)||(13228577-13228611)
chr5 (460-494)||(14647462-14647496)
chr5 (460-494)||(24793970-24794004)
chr5 (460-494)||(30299696-30299730)
chr5 (460-494)||(30412717-30412751)
chr5 (460-494)||(39744647-39744681)
chr5 (460-497)||(5997999-5998036)
chr5 (459-492)||(19347705-19347738)
chr5 (464-492)||(11100871-11100899)
chr5 (462-494)||(19956414-19956446)
chr5 (460-492)||(39246941-39246973)
[»] chr4 (31 HSPs)
chr4 (105-242)||(7130651-7130786)
chr4 (97-241)||(54359098-54359239)
chr4 (460-494)||(17715579-17715613)
chr4 (460-494)||(7706367-7706401)
chr4 (460-494)||(9043726-9043760)
chr4 (460-494)||(11600678-11600712)
chr4 (460-494)||(18582839-18582873)
chr4 (460-494)||(22038472-22038506)
chr4 (460-494)||(28307250-28307284)
chr4 (460-494)||(35777501-35777535)
chr4 (460-494)||(39087673-39087707)
chr4 (460-494)||(42116891-42116925)
chr4 (460-494)||(45780852-45780886)
chr4 (460-494)||(46895278-46895312)
chr4 (460-494)||(47417590-47417624)
chr4 (460-494)||(53273113-53273147)
chr4 (460-494)||(53407184-53407218)
chr4 (460-494)||(55495995-55496029)
chr4 (460-494)||(56372430-56372464)
chr4 (478-515)||(11050297-11050334)
chr4 (460-493)||(21633931-21633964)
chr4 (459-492)||(24954315-24954348)
chr4 (459-515)||(3932350-3932406)
chr4 (460-492)||(11152054-11152086)
chr4 (460-492)||(27397881-27397913)
chr4 (460-492)||(29413528-29413560)
chr4 (460-492)||(29663926-29663958)
chr4 (460-492)||(33005243-33005275)
chr4 (464-492)||(35190735-35190763)
chr4 (460-492)||(36008120-36008152)
chr4 (478-514)||(37831904-37831940)
[»] chr3 (34 HSPs)
chr3 (97-241)||(30426736-30426878)
chr3 (459-514)||(42217642-42217697)
chr3 (460-511)||(30814369-30814420)
chr3 (478-519)||(24628329-24628370)
chr3 (459-492)||(44947319-44947352)
chr3 (460-492)||(193398-193430)
chr3 (485-521)||(2851803-2851839)
chr3 (460-492)||(5505852-5505884)
chr3 (460-515)||(2187315-2187370)
chr3 (460-515)||(31558317-31558372)
chr3 (460-494)||(8872872-8872906)
chr3 (460-494)||(16127258-16127292)
chr3 (460-494)||(25570378-25570412)
chr3 (460-494)||(26540959-26540993)
chr3 (460-494)||(28677009-28677043)
chr3 (460-494)||(29081400-29081434)
chr3 (460-494)||(35499600-35499634)
chr3 (460-494)||(37088283-37088317)
chr3 (460-494)||(38185769-38185803)
chr3 (460-494)||(40480140-40480174)
chr3 (460-494)||(40563482-40563516)
chr3 (460-494)||(44545229-44545263)
chr3 (460-494)||(44845623-44845657)
chr3 (460-494)||(45345127-45345161)
chr3 (459-492)||(37714083-37714116)
chr3 (466-499)||(39719301-39719334)
chr3 (460-489)||(39719358-39719387)
chr3 (460-497)||(52225281-52225318)
chr3 (460-492)||(39469914-39469946)
chr3 (460-492)||(48942992-48943024)
chr3 (460-492)||(52788677-52788709)
chr3 (460-492)||(52794896-52794928)
chr3 (460-492)||(54542054-54542086)
chr3 (460-492)||(55305228-55305260)
[»] chr2 (23 HSPs)
chr2 (460-517)||(10393146-10393203)
chr2 (460-519)||(40869470-40869529)
chr2 (460-515)||(13761754-13761809)
chr2 (460-514)||(41877705-41877759)
chr2 (478-520)||(43285599-43285641)
chr2 (478-519)||(7400513-7400554)
chr2 (460-492)||(22375955-22375987)
chr2 (461-492)||(5520180-5520211)
chr2 (460-494)||(2546435-2546469)
chr2 (460-494)||(3377388-3377422)
chr2 (460-494)||(4453634-4453668)
chr2 (460-494)||(5039771-5039805)
chr2 (460-494)||(9886988-9887022)
chr2 (460-494)||(13111854-13111888)
chr2 (460-494)||(15521475-15521509)
chr2 (460-494)||(16486878-16486912)
chr2 (460-494)||(21865242-21865276)
chr2 (460-494)||(28382791-28382825)
chr2 (460-494)||(36712647-36712681)
chr2 (460-494)||(37356164-37356198)
chr2 (460-494)||(38579119-38579153)
chr2 (460-515)||(23357095-23357151)
chr2 (460-492)||(43507673-43507705)
[»] scaffold0009 (1 HSPs)
scaffold0009 (464-515)||(191990-192041)
[»] chr1 (25 HSPs)
chr1 (464-515)||(34086947-34086998)
chr1 (459-492)||(7781262-7781295)
chr1 (459-514)||(3391102-3391157)
chr1 (459-494)||(26204276-26204311)
chr1 (460-494)||(1918027-1918061)
chr1 (460-494)||(2479162-2479196)
chr1 (460-494)||(13121683-13121717)
chr1 (460-494)||(17046731-17046765)
chr1 (460-494)||(26843753-26843787)
chr1 (459-493)||(29374333-29374367)
chr1 (460-494)||(29586160-29586194)
chr1 (460-494)||(30721723-30721757)
chr1 (460-494)||(31150524-31150558)
chr1 (460-494)||(33561994-33562028)
chr1 (460-494)||(36301203-36301237)
chr1 (460-494)||(36838794-36838828)
chr1 (460-494)||(39826602-39826636)
chr1 (460-494)||(42064416-42064450)
chr1 (460-490)||(52703210-52703240)
chr1 (460-493)||(49220572-49220605)
chr1 (460-492)||(3270663-3270695)
chr1 (460-496)||(9770070-9770106)
chr1 (460-492)||(38967562-38967594)
chr1 (460-492)||(46369809-46369841)
chr1 (460-492)||(50351036-50351068)
[»] chr7 (18 HSPs)
chr7 (460-513)||(28425733-28425786)
chr7 (464-515)||(23029767-23029818)
chr7 (460-494)||(10312151-10312185)
chr7 (459-493)||(27655794-27655828)
chr7 (460-494)||(36246498-36246532)
chr7 (460-494)||(40637282-40637316)
chr7 (460-494)||(42375904-42375938)
chr7 (460-494)||(42587505-42587539)
chr7 (460-494)||(43254102-43254136)
chr7 (460-494)||(45687038-45687072)
chr7 (460-494)||(47471084-47471118)
chr7 (478-515)||(47584097-47584134)
chr7 (464-492)||(1342777-1342805)
chr7 (460-492)||(27089778-27089810)
chr7 (460-492)||(27188491-27188523)
chr7 (460-492)||(31511301-31511333)
chr7 (460-492)||(35587580-35587612)
chr7 (462-494)||(43134404-43134436)
[»] chr8 (17 HSPs)
chr8 (460-515)||(39677353-39677408)
chr8 (459-494)||(43276884-43276919)
chr8 (459-499)||(29189839-29189879)
chr8 (459-494)||(1893955-1893990)
chr8 (464-515)||(3511195-3511246)
chr8 (459-494)||(6338316-6338351)
chr8 (459-494)||(23676869-23676904)
chr8 (460-494)||(17081652-17081686)
chr8 (460-494)||(17115536-17115570)
chr8 (460-494)||(25023304-25023338)
chr8 (460-494)||(31478074-31478108)
chr8 (460-494)||(31581692-31581726)
chr8 (460-494)||(32541221-32541255)
chr8 (460-494)||(39871263-39871297)
chr8 (460-494)||(45141569-45141603)
chr8 (460-492)||(27781102-27781134)
chr8 (460-492)||(41694023-41694055)
[»] scaffold0343 (1 HSPs)
scaffold0343 (460-512)||(9210-9262)
[»] scaffold0122 (1 HSPs)
scaffold0122 (459-494)||(12830-12865)
[»] scaffold0166 (1 HSPs)
scaffold0166 (460-494)||(36353-36387)
[»] scaffold0116 (1 HSPs)
scaffold0116 (460-494)||(22593-22627)
[»] scaffold0075 (1 HSPs)
scaffold0075 (460-494)||(27249-27283)
[»] scaffold0031 (1 HSPs)
scaffold0031 (460-494)||(126874-126908)
[»] scaffold0027 (1 HSPs)
scaffold0027 (460-494)||(41859-41893)
[»] scaffold1360 (1 HSPs)
scaffold1360 (459-515)||(1345-1401)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 97 - 529
Target Start/End: Original strand, 19177944 - 19178373
Alignment:
Q  97 aagttgcgaagtgtttccgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaatnnnnnnnnntgccacatgtgagagtg 196  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  19177944 aagttgcaaagtgtttctgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaataaaaaaa--tgccacatgtgagagtg 19178041  T
Q  197 tgcatgatggtttgccacataaatgtgtttatgtatcacttctctaannnnnnnnctctctcatttgatttgcttatcgtcatggttttgcactagttgt 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||    
T  19178042 tgcatgatggtttgccacataagtgtgtttatgtatcacttctctaattttttt-ctctctcatttgatttgcttatcatcatggttttgcactagttgt 19178140  T
Q  297 atgatctttggctaattcttgctacaacttctgagcttaagttgtttcttcctatatcttgtttgcttataaatatgaatgtcttttttacttttacctc 396  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19178141 ataatctttggctaattcttgctacaacttctgagcttaagttgtttcttactatatcttgtttgcttataaaaatgaatgtcttttttacttttacctc 19178240  T
Q  397 cacagttagttcttttctttgcactagttgta-ttttttacctccacagttagnnnnnnnnnnatcaaacgagcttataagctataagctataagctaat 495  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||           ||||||||| |||||||||||||||||||| |||||    
T  19178241 cagagttagttcttttctttgcactagttgtatttttttacctccacagttagtttttttttg-tcaaacgagattataagctataagctataaactaat 19178339  T
Q  496 ttagatgtcttaccaaacagtgccttcatatcac 529  Q
    ||||||||||||||||||||||||||||| ||||    
T  19178340 ttagatgtcttaccaaacagtgccttcatgtcac 19178373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 11015618 - 11015567
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  11015618 acgagcttataagctataagctataagctcattgacatgtcttaccaaacag 11015567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 214510 - 214466
Alignment:
Q  252 ctctctcatttgatttgcttatcgtcatggttttgcactagttgt 296  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  214510 ctctctcatttgatttacttatcgtcatggtattgcactagttgt 214466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 1806429 - 1806463
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||||||||||    
T  1806429 tcaaacgagcttataagctataagctataagctaa 1806463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 3108121 - 3108153
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||||||    
T  3108121 tcaaacgagcttataagctataagctataagct 3108153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Original strand, 14227648 - 14227683
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  14227648 atcaaacgagcttataagctataagctaaaagctaa 14227683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 28076451 - 28076400
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||| ||||||||||||||||||||||| ||| | || |||||||||||||    
T  28076451 acgagtttataagctataagctataagctcattgacatatcttaccaaacag 28076400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 34439711 - 34439660
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    |||||||||||||||||||||||||||||  || || ||| |||||||||||    
T  34439711 acgagcttataagctataagctataagctcgttgaggtgtattaccaaacag 34439660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 2442457 - 2442423
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  2442457 tcaaacgagcttataagctataagctaaaagctaa 2442423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 31100129 - 31100163
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  31100129 tcaaacgagcttataagctataagctaaaagctaa 31100163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 31452068 - 31452102
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  31452068 tcaaacgagcttataagctataagctaaaagctaa 31452102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 32731791 - 32731757
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  32731791 tcaaacgagcttataagctataagctaaaagctaa 32731757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 33453768 - 33453714
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaaca 514  Q
    |||||||| ||||||| |||||||||||||||||||  || ||||||| ||||||    
T  33453768 tcaaacgaacttataaactataagctataagctaatagaggtgtcttatcaaaca 33453714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 34233029 - 34233063
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  34233029 tcaaacgagcttataagctataagctaaaagctaa 34233063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 34903992 - 34903958
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  34903992 tcaaacgagcttataagctataagctaaaagctaa 34903958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 29823150 - 29823183
Alignment:
Q  460 tcaaacgagcttataagctataagctataagcta 493  Q
    |||||||||||||||||||||||||||| |||||    
T  29823150 tcaaacgagcttataagctataagctatgagcta 29823183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 558392 - 558360
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  558392 tcaaacgagcttataagctataagctaaaagct 558360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 10856165 - 10856133
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  10856165 tcaaacgagcttataagctataagctaaaagct 10856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 34685129 - 34685161
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  34685129 tcaaacgagcttataagctataagctaaaagct 34685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 19191095 - 19190951
Alignment:
Q  97 aagttgcgaagtgtttccgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaatnnnnnnnnntgccacatgtgagagtg 196  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||| ||||  ||    
T  19191095 aagttgcaaagtgtttctgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaat--aaaaaaatgtcacatatgaggatg 19190998  T
Q  197 tgcatgatggtttgccacataaatgtgtttatgtatcacttctctaa 243  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||    
T  19190997 tacatgatggtttgccacataagtgtgtttatgtatcacttctctaa 19190951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 11063014 - 11063074
Alignment:
Q  461 caaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgcctt 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11063014 caaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgcctt 11063074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 5382048 - 5382109
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgcctt 521  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5382048 tcaaacgagcttataagctataagctataagctaatttaaatgtcttaccaaacagtgcctt 5382109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 22977330 - 22977389
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgcc 519  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22977330 tcaaacgagcttataaactataagctataagctaatttagatgtcttaccaaacagtgcc 22977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 460 - 518
Target Start/End: Original strand, 26699211 - 26699269
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgc 518  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  26699211 tcaaacgagcttataacctataagctataagctaatttaggtgtcttaccaaacagtgc 26699269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 460 - 518
Target Start/End: Original strand, 26968944 - 26969002
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgc 518  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  26968944 tcaaacgagcttataacctataagctataagctaatttaggtgtcttaccaaacagtgc 26969002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 1711308 - 1711342
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||||||||||    
T  1711308 tcaaacgagcttataagctataagctataagctaa 1711342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 9587292 - 9587326
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||||||||||    
T  9587292 tcaaacgagcttataagctataagctataagctaa 9587326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 16474803 - 16474748
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||| ||||||||||||||||||||||| |||||   | ||||||||||||    
T  16474803 tcaaacgagtttataagctataagctataagctcatttaatgggcttaccaaacag 16474748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 32382882 - 32382847
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  32382882 atcaaacgagcttataagctataagctaaaagctaa 32382847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 2236621 - 2236655
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  2236621 tcaaacgagcttataagctataagctaaaagctaa 2236655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 2671446 - 2671412
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  2671446 tcaaacgagcttataagctataagctaaaagctaa 2671412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 4221578 - 4221612
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  4221578 tcaaacgagcttataagctataagctaaaagctaa 4221612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 5591620 - 5591586
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  5591620 tcaaacgagcttataagctataagctaaaagctaa 5591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 12713344 - 12713310
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  12713344 tcaaacgagcttataagctataagctaaaagctaa 12713310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 12774608 - 12774574
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  12774608 tcaaacgagcttataagctataagctaaaagctaa 12774574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 13228577 - 13228611
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  13228577 tcaaacgagcttataagctataagctaaaagctaa 13228611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 14647462 - 14647496
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  14647462 tcaaacgagcttataagctataagctaaaagctaa 14647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 24794004 - 24793970
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  24794004 tcaaacgagcttataagctataagctaaaagctaa 24793970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 30299730 - 30299696
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  30299730 tcaaacgagcttataagctataagctaaaagctaa 30299696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 30412717 - 30412751
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  30412717 tcaaacgagcttataagctataagctaaaagctaa 30412751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 39744647 - 39744681
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  39744647 tcaaacgagcttataagctataagctaaaagctaa 39744681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 5997999 - 5998036
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaattt 497  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  5997999 tcaaacgagcttataagctataagctaaaagctcattt 5998036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 492
Target Start/End: Complemental strand, 19347738 - 19347705
Alignment:
Q  459 atcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||| ||||||||||||    
T  19347738 atcaaacgagcttataagctaaaagctataagct 19347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 11100871 - 11100899
Alignment:
Q  464 acgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||    
T  11100871 acgagcttataagctataagctataagct 11100899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 19956414 - 19956446
Alignment:
Q  462 aaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||| |||||||    
T  19956414 aaacgagcttataagctataagctaaaagctaa 19956446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 39246941 - 39246973
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  39246941 tcaaacgagcttataagctataagctaaaagct 39246973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 7130786 - 7130651
Alignment:
Q  105 aagtgtttccgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaatnnnnnnnnntgccacatgtgagagtgtgcatgat 204  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||         | ||||||||||| |||| |||| |    
T  7130786 aagtatttctgacaaaattgcccttaaatttttattgtttgacaaaattatcctcatataattaat--aaaaaaataccacatgtgagggtgtacatggt 7130689  T
Q  205 ggtttgccacataaatgtgtttatgtatcacttctcta 242  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7130688 ggtttgccacataagtgtgtttatgtatcacttctcta 7130651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 54359098 - 54359239
Alignment:
Q  97 aagttgcgaagtgtttccgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaatnnnnnnnnntgccacatgtgagagtg 196  Q
    ||||||| ||||||||  |||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||         |||| ||||| ||  ||    
T  54359098 aagttgcaaagtgtttatgacaaaattgtccttaaatttttattgtttgacaaaattatcctca--taattaat-aaaaaaaatgccccatgtaaggatg 54359194  T
Q  197 tgcatgatggtttgccacataaatgtgtttatgtatcacttctct 241  Q
    | |||||||||||||||||||| ||||||||||||||||||||||    
T  54359195 tacatgatggtttgccacataagtgtgtttatgtatcacttctct 54359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 17715613 - 17715579
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||||||||||    
T  17715613 tcaaacgagcttataagctataagctataagctaa 17715579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 7706401 - 7706367
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  7706401 tcaaacgagcttataagctataagctaaaagctaa 7706367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 9043726 - 9043760
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  9043726 tcaaacgagcttataagctataagctaaaagctaa 9043760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 11600712 - 11600678
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  11600712 tcaaacgagcttataagctataagctaaaagctaa 11600678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 18582873 - 18582839
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  18582873 tcaaacgagcttataagctataagctaaaagctaa 18582839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 22038472 - 22038506
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  22038472 tcaaacgagcttataagctataagctaaaagctaa 22038506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 28307284 - 28307250
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  28307284 tcaaacgagcttataagctataagctaaaagctaa 28307250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 35777501 - 35777535
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  35777501 tcaaacgagcttataagctataagctaaaagctaa 35777535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 39087673 - 39087707
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  39087673 tcaaacgagcttataagctataagctagaagctaa 39087707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 42116925 - 42116891
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  42116925 tcaaacgagcttataagctataagctaaaagctaa 42116891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 45780852 - 45780886
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  45780852 tcaaacgagcttataagctataagctaaaagctaa 45780886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 46895312 - 46895278
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  46895312 tcaaacgagcttataagctataagctaaaagctaa 46895278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 47417590 - 47417624
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  47417590 tcaaacgagcttataagctataagctaaaagctaa 47417624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 53273147 - 53273113
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  53273147 tcaaacgagcttataagctataagctaaaagctaa 53273113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 53407218 - 53407184
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  53407218 tcaaacgagcttataagctataagctaaaagctaa 53407184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 55495995 - 55496029
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  55495995 tcaaacgagcttataagctataagctaaaagctaa 55496029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 56372464 - 56372430
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  56372464 tcaaacgagcttataagctataagctaaaagctaa 56372430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 11050334 - 11050297
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  11050334 tataagctataagctcattgagatgtcttaccaaacag 11050297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 21633931 - 21633964
Alignment:
Q  460 tcaaacgagcttataagctataagctataagcta 493  Q
    |||||||| |||||||||||||||||||||||||    
T  21633931 tcaaacgaacttataagctataagctataagcta 21633964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 24954315 - 24954348
Alignment:
Q  459 atcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||| |||||||||    
T  24954315 atcaaacgagcttataagctataaactataagct 24954348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 3932350 - 3932406
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||  |||||||||| ||||    ||||||||||||||    
T  3932350 atcaaacgagcttataagctattcgctataagctcattttttggtcttaccaaacag 3932406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 11152054 - 11152086
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  11152054 tcaaacgagcttataagctataagctaaaagct 11152086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 27397881 - 27397913
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  27397881 tcaaacgagcttataagctataagctaaaagct 27397913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 29413560 - 29413528
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  29413560 tcaaacgagcttataagctataagctaaaagct 29413528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 29663958 - 29663926
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  29663958 tcaaacgagcttataagctataagctaaaagct 29663926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 33005243 - 33005275
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  33005243 tcaaacgagcttataagctataagctaaaagct 33005275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 35190735 - 35190763
Alignment:
Q  464 acgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||    
T  35190735 acgagcttataagctataagctataagct 35190763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 36008120 - 36008152
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  36008120 tcaaacgagcttataagctataagctaaaagct 36008152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 514
Target Start/End: Complemental strand, 37831940 - 37831904
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaaca 514  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  37831940 tataagctataagctaatttaggtgttttaccaaaca 37831904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 30426878 - 30426736
Alignment:
Q  97 aagttgcgaagtgtttccgacaaaattgcccttaaatttttattgtttgacaaaattgtcctcatgtaattaatnnnnnnnnntgccacatgtgagagtg 196  Q
    ||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||         |||| |||||||  |||    
T  30426878 aagttgcaaagtgtttttgacaagattgcccttaaatttttattgtttgacaaaattgtccttatgtaattaat--aaaaaaatgcctcatgtgaaggtg 30426781  T
Q  197 tgcatgatggtttgccacataaatgtgtttatgtatcacttctct 241  Q
    | ||| |||||||| ||||||| |||||||||| |||||||||||    
T  30426780 tacataatggtttgtcacataagtgtgtttatgcatcacttctct 30426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 42217697 - 42217642
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaaca 514  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  42217697 atcaaacgagcttataagctataagctataagctaattgagatgtgttaccaaaca 42217642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 511
Target Start/End: Original strand, 30814369 - 30814420
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaa 511  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||||||||    
T  30814369 tcaaacgagcttaaaagctataagctataagctaatagaggtgtcttaccaa 30814420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 24628329 - 24628370
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaacagtgcc 519  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  24628329 tataagctataagctaatttaggtgtcttaccaaatagtgcc 24628370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 44947319 - 44947352
Alignment:
Q  459 atcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||||||||||    
T  44947319 atcaaacgagcttataagctataagctataagct 44947352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 193430 - 193398
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||||||    
T  193430 tcaaacgagcttataagctataagctataagct 193398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 2851839 - 2851803
Alignment:
Q  485 tataagctaatttagatgtcttaccaaacagtgcctt 521  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2851839 tataagctaatttaggtgtcttaccaaacagtgcctt 2851803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 5505884 - 5505852
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||||||    
T  5505884 tcaaacgagcttataagctataagctataagct 5505852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 2187315 - 2187370
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||| ||||||||||| ||||| ||||||  | ||||||||||||    
T  2187315 tcaaacgagcttataggctataagctaaaagctcatttagtgggcttaccaaacag 2187370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 31558317 - 31558372
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||  ||||| ||||||  | ||||||||||||    
T  31558317 tcaaacgagcttataagctataagctcaaagctcatttagtgggcttaccaaacag 31558372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 8872906 - 8872872
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  8872906 tcaaacgagcttataagctataagctaaaagctaa 8872872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 16127258 - 16127292
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  16127258 tcaaacgagcttataagctataagctaaaagctaa 16127292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 25570412 - 25570378
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  25570412 tcaaacgagcttataagctataagctaaaagctaa 25570378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 26540993 - 26540959
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  26540993 tcaaacgagcttataagctataagctaaaagctaa 26540959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 28677009 - 28677043
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  28677009 tcaaacgagcttataagctataagctaaaagctaa 28677043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 29081400 - 29081434
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  29081400 tcaaacgagcttataagctataagctaaaagctaa 29081434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 35499634 - 35499600
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  35499634 tcaaacgagcttataagctataagctaaaagctaa 35499600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 37088317 - 37088283
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  37088317 tcaaacgagcttataagctataagctaaaagctaa 37088283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 38185803 - 38185769
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  38185803 tcaaacgagcttataagctataagctaaaagctaa 38185769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 40480140 - 40480174
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  40480140 tcaaacgagcttataagctataagctaaaagctaa 40480174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 40563482 - 40563516
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  40563482 tcaaacgagcttataagctataagctaaaagctaa 40563516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 44545263 - 44545229
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  44545263 tcaaacgagcttataagctataagctaaaagctaa 44545229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 44845657 - 44845623
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  44845657 tcaaacgagcttataagctataagctaaaagctaa 44845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 45345127 - 45345161
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  45345127 tcaaacgagcttataagctataagctaaaagctaa 45345161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 37714083 - 37714116
Alignment:
Q  459 atcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||| |||||    
T  37714083 atcaaacgagcttataagctataagctaaaagct 37714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Original strand, 39719301 - 39719334
Alignment:
Q  466 gagcttataagctataagctataagctaatttag 499  Q
    ||||||||||||||||||||||||||| ||||||    
T  39719301 gagcttataagctataagctataagcttatttag 39719334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 489
Target Start/End: Complemental strand, 39719387 - 39719358
Alignment:
Q  460 tcaaacgagcttataagctataagctataa 489  Q
    ||||||||||||||||||||||||||||||    
T  39719387 tcaaacgagcttataagctataagctataa 39719358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 52225318 - 52225281
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaattt 497  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  52225318 tcaaacgagcttataagctatgagctataagctcattt 52225281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 39469946 - 39469914
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  39469946 tcaaacgagcttataagctataagctaaaagct 39469914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 48943024 - 48942992
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  48943024 tcaaacgagcttataagctataagctaaaagct 48942992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 52788709 - 52788677
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  52788709 tcaaacgagcttataagctataagctaaaagct 52788677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 52794928 - 52794896
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  52794928 tcaaacgagcttataagctataagctaaaagct 52794896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 54542054 - 54542086
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  54542054 tcaaacgagcttataagctataagctaaaagct 54542086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 55305228 - 55305260
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  55305228 tcaaacgagcttataagctataagctaaaagct 55305260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 460 - 517
Target Start/End: Original strand, 10393146 - 10393203
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtg 517  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10393146 tcaaacgagcttataagctataagctataagctaatttaggtgtcttaccaaacagtg 10393203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 40869470 - 40869529
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacagtgcc 519  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  40869470 tcaaatgagcttataaactataagctataagctaatttaggtgtcttaccaatcagtgcc 40869529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 13761809 - 13761754
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||    
T  13761809 tcaaacgagcttataagctataagctataagctcatttagtgggcttaccaaacag 13761754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 41877759 - 41877705
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaaca 514  Q
    |||||||| |||||||||||||||||||||||| ||||||  | |||||||||||    
T  41877759 tcaaacgaacttataagctataagctataagctcatttagtggacttaccaaaca 41877705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 43285641 - 43285599
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaacagtgcct 520  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  43285641 tataagctataagttaatttaggtgtcttaccaaacagtgcct 43285599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 7400513 - 7400554
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaacagtgcc 519  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  7400513 tataagctataaactaatttaaatgtcttaccaaacagtgcc 7400554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 22375987 - 22375955
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||||||    
T  22375987 tcaaacgagcttataagctataagctataagct 22375955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 5520180 - 5520211
Alignment:
Q  461 caaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||||||||    
T  5520180 caaacgagcttataagctataagctataagct 5520211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 2546435 - 2546469
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  2546435 tcaaacgagcttataagctataagctaaaagctaa 2546469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 3377422 - 3377388
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  3377422 tcaaacgagcttataagctataagctaaaagctaa 3377388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 4453634 - 4453668
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  4453634 tcaaacgagcttataagctataagctaaaagctaa 4453668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 5039805 - 5039771
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  5039805 tcaaacgagcttataagctataagctaaaagctaa 5039771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 9887022 - 9886988
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  9887022 tcaaacgagcttataagctataagctaaaagctaa 9886988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 13111854 - 13111888
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  13111854 tcaaacgagcttataagctataagctaaaagctaa 13111888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 15521509 - 15521475
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  15521509 tcaaacgagcttataagctataagctaaaagctaa 15521475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 16486912 - 16486878
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  16486912 tcaaacgagcttataagctataagctaaaagctaa 16486878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 21865276 - 21865242
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  21865276 tcaaacgagcttataagctataagctaaaagctaa 21865242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 28382791 - 28382825
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  28382791 tcaaacgagcttataagctataagctaaaagctaa 28382825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 36712647 - 36712681
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  36712647 tcaaacgagcttataagctataagctaaaagctaa 36712681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 37356198 - 37356164
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  37356198 tcaaacgagcttataagctataagctaaaagctaa 37356164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 38579119 - 38579153
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  38579119 tcaaacgagcttataagctataagctaaaagctaa 38579153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 23357095 - 23357151
Alignment:
Q  460 tcaaacgagcttataagc-tataagctataagctaatttagatgtcttaccaaacag 515  Q
    |||||||||||||||||| ||||||||||||||| |||||   | ||||||||||||    
T  23357095 tcaaacgagcttataagcctataagctataagctcatttaatgggcttaccaaacag 23357151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 43507673 - 43507705
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  43507673 tcaaacgagcttataagctataagctaaaagct 43507705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 192041 - 191990
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  192041 acgagcttataagctataagctataagctcattgacatgtcttaccaaacag 191990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 34086998 - 34086947
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  34086998 acgagcttataagctataagctataagctcattgacatgtcttaccaaacag 34086947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 7781262 - 7781295
Alignment:
Q  459 atcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||||||||||    
T  7781262 atcaaacgagcttataagctataagctataagct 7781295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 3391157 - 3391102
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaaca 514  Q
    ||||||| | |||||||||||||  ||||||||||||| |||||| ||||||||||    
T  3391157 atcaaacaaacttataagctatagactataagctaattgagatgtgttaccaaaca 3391102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 26204311 - 26204276
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  26204311 atcaaacgagcttataagctataagctaaaagctaa 26204276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 1918061 - 1918027
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  1918061 tcaaacgagcttataagctataagctaaaagctaa 1918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 2479196 - 2479162
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  2479196 tcaaacgagcttataagctataagctaaaagctaa 2479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 13121683 - 13121717
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  13121683 tcaaacgagcttataagctataagctaaaagctaa 13121717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 17046765 - 17046731
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  17046765 tcaaacgagcttataagctataagctaaaagctaa 17046731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 26843787 - 26843753
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  26843787 tcaaacgagcttataagctataagctaaaagctaa 26843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 493
Target Start/End: Complemental strand, 29374367 - 29374333
Alignment:
Q  459 atcaaacgagcttataagctataagctataagcta 493  Q
    ||||||||||||||||||||| |||||||||||||    
T  29374367 atcaaacgagcttataagctaaaagctataagcta 29374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 29586194 - 29586160
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  29586194 tcaaacgagcttataagctataagctaaaagctaa 29586160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 30721723 - 30721757
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  30721723 tcaaacgagcttataagctataagctaaaagctaa 30721757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 31150524 - 31150558
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  31150524 tcaaacgagcttataagctataagctaaaagctaa 31150558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 33561994 - 33562028
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  33561994 tcaaacgagcttataagctataagctaaaagctaa 33562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 36301203 - 36301237
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  36301203 tcaaacgagcttataagctataagctaaaagctaa 36301237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 36838794 - 36838828
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  36838794 tcaaacgagcttataagctataagctaaaagctaa 36838828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 39826636 - 39826602
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  39826636 tcaaacgagcttataagctataagctaaaagctaa 39826602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 42064416 - 42064450
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  42064416 tcaaacgagcttataagctataagctaaaagctaa 42064450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 490
Target Start/End: Original strand, 52703210 - 52703240
Alignment:
Q  460 tcaaacgagcttataagctataagctataag 490  Q
    |||||||||||||||||||||||||||||||    
T  52703210 tcaaacgagcttataagctataagctataag 52703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 49220572 - 49220605
Alignment:
Q  460 tcaaacgagcttataagctataagctataagcta 493  Q
    ||||||||||||||||||||||||||| ||||||    
T  49220572 tcaaacgagcttataagctataagctaaaagcta 49220605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 3270695 - 3270663
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  3270695 tcaaacgagcttataagctataagctaaaagct 3270663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 9770070 - 9770106
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatt 496  Q
    |||||| |||||||||||||| |||||||||||||||    
T  9770070 tcaaacaagcttataagctatgagctataagctaatt 9770106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 38967562 - 38967594
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  38967562 tcaaacgagcttataagctataagctaaaagct 38967594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 46369841 - 46369809
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  46369841 tcaaacgagcttataagctataagctaaaagct 46369809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 50351068 - 50351036
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  50351068 tcaaacgagcttataagctataagctaaaagct 50351036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 28425733 - 28425786
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaac 513  Q
    ||||||||| ||||||||||||||||||||||||||  || |||||||||||||    
T  28425733 tcaaacgagtttataagctataagctataagctaatagaggtgtcttaccaaac 28425786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 23029818 - 23029767
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  23029818 acgagcttataagctataagctataagctcattgtggtgtcttaccaaacag 23029767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 10312151 - 10312185
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  10312151 tcaaacgagcttataagctataagctaaaagctaa 10312185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 27655794 - 27655828
Alignment:
Q  459 atcaaacgagcttataagctataagctataagcta 493  Q
    ||||||||||||||||||||| |||||||||||||    
T  27655794 atcaaacgagcttataagctaaaagctataagcta 27655828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 36246498 - 36246532
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  36246498 tcaaacgagcttataagctataagctaaaagctaa 36246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 40637282 - 40637316
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  40637282 tcaaacgagcttataagctataagctaaaagctaa 40637316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 42375904 - 42375938
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  42375904 tcaaacgagcttataagctataagctaaaagctaa 42375938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 42587505 - 42587539
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  42587505 tcaaacgagcttataagctataagctaaaagctaa 42587539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 43254136 - 43254102
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  43254136 tcaaacgagcttataagctataagctaaaagctaa 43254102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 45687038 - 45687072
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  45687038 tcaaacgagcttataagctataagctaaaagctaa 45687072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 47471084 - 47471118
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  47471084 tcaaacgagcttataagctataagctaaaagctaa 47471118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 47584134 - 47584097
Alignment:
Q  478 tataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  47584134 tataagctataagctaattgagatgtgttaccaaacag 47584097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 492
Target Start/End: Complemental strand, 1342805 - 1342777
Alignment:
Q  464 acgagcttataagctataagctataagct 492  Q
    |||||||||||||||||||||||||||||    
T  1342805 acgagcttataagctataagctataagct 1342777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 27089778 - 27089810
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  27089778 tcaaacgagcttataagctataagctaaaagct 27089810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 27188523 - 27188491
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  27188523 tcaaacgagcttataagctataagctaaaagct 27188491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 31511333 - 31511301
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  31511333 tcaaacgagcttataagctataagctaaaagct 31511301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 35587612 - 35587580
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  35587612 tcaaacgagcttataagctataagctaaaagct 35587580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 43134436 - 43134404
Alignment:
Q  462 aaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||| |||||||    
T  43134436 aaacgagcttataagctataagctaaaagctaa 43134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 39677408 - 39677353
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    |||||| |||||||||||||||||||||||||| ||||||  | ||||||||||||    
T  39677408 tcaaacaagcttataagctataagctataagctcatttagtgggcttaccaaacag 39677353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 494
Target Start/End: Original strand, 43276884 - 43276919
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||||||||||||    
T  43276884 atcaaacgagcttataagctataagctataagctaa 43276919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 29189839 - 29189879
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaatttag 499  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  29189839 atcaaacgagtttataagctataagctataagctcatttag 29189879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Original strand, 1893955 - 1893990
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  1893955 atcaaacgagcttataagctataagctaaaagctaa 1893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 3511246 - 3511195
Alignment:
Q  464 acgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    |||| |||||||||||||||||||||| | ||| || |||||||||||||||    
T  3511246 acgaacttataagctataagctataagttcattgaggtgtcttaccaaacag 3511195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 6338351 - 6338316
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  6338351 atcaaacgagcttataagctataagctagaagctaa 6338316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 23676904 - 23676869
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  23676904 atcaaacgagcttataagctataagctaaaagctaa 23676869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 17081686 - 17081652
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  17081686 tcaaacgagcttataagctataagctaaaagctaa 17081652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 17115570 - 17115536
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  17115570 tcaaacgagcttataagctataagctaaaagctaa 17115536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 25023338 - 25023304
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  25023338 tcaaacgagcttataagctataagctaaaagctaa 25023304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 31478108 - 31478074
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  31478108 tcaaacgagcttataagctataagctaaaagctaa 31478074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 31581726 - 31581692
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  31581726 tcaaacgagcttataagctataagctaaaagctaa 31581692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 32541255 - 32541221
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  32541255 tcaaacgagcttataagctataagctaaaagctaa 32541221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 39871297 - 39871263
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  39871297 tcaaacgagcttataagctataagctaaaagctaa 39871263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 45141569 - 45141603
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  45141569 tcaaacgagcttataagctataagctaaaagctaa 45141603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 27781134 - 27781102
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  27781134 tcaaacgagcttataagctataagctaaaagct 27781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 41694023 - 41694055
Alignment:
Q  460 tcaaacgagcttataagctataagctataagct 492  Q
    ||||||||||||||||||||||||||| |||||    
T  41694023 tcaaacgagcttataagctataagctaaaagct 41694055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 512
Target Start/End: Complemental strand, 9262 - 9210
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaa 512  Q
    ||||||||||||||||| ||||||||||||||| ||||||  | |||||||||    
T  9262 tcaaacgagcttataaggtataagctataagctcatttagtgggcttaccaaa 9210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Original strand, 12830 - 12865
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaa 494  Q
    |||||||||||||||||||||||||||| |||||||    
T  12830 atcaaacgagcttataagctataagctaaaagctaa 12865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 36387 - 36353
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  36387 tcaaacgagcttataagctataagctaaaagctaa 36353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 22627 - 22593
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  22627 tcaaacgagcttataagctataagctaaaagctaa 22593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 27249 - 27283
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  27249 tcaaacgagcttataagctataagctaaaagctaa 27283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 126874 - 126908
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  126874 tcaaacgagcttataagctataagctaaaagctaa 126908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 41859 - 41893
Alignment:
Q  460 tcaaacgagcttataagctataagctataagctaa 494  Q
    ||||||||||||||||||||||||||| |||||||    
T  41859 tcaaacgagcttataagctataagctaaaagctaa 41893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 1345 - 1401
Alignment:
Q  459 atcaaacgagcttataagctataagctataagctaatttagatgtcttaccaaacag 515  Q
    ||||||||||||||||||||||  |||||||||| ||||    ||||||||||||||    
T  1345 atcaaacgagcttataagctattcgctataagctcattttttggtcttaccaaacag 1401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 466 times since January 2019
Visitors: 3651