View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_121 (Length: 211)

Name: NF0526_low_121
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_121
NF0526_low_121
[»] chr1 (22 HSPs)
chr1 (103-208)||(10979469-10979574)
chr1 (102-208)||(11007873-11007979)
chr1 (99-208)||(10974391-10974500)
chr1 (102-208)||(11011035-11011141)
chr1 (101-208)||(11033326-11033433)
chr1 (102-208)||(10914734-10914840)
chr1 (102-206)||(11028466-11028570)
chr1 (105-208)||(10903571-10903674)
chr1 (102-184)||(11004881-11004963)
chr1 (99-189)||(9233915-9234005)
chr1 (99-189)||(9453680-9453770)
chr1 (99-189)||(9399796-9399886)
chr1 (119-184)||(8964681-8964746)
chr1 (104-177)||(8999839-8999912)
chr1 (99-189)||(9384389-9384479)
chr1 (99-189)||(9432693-9432783)
chr1 (119-186)||(9464285-9464352)
chr1 (119-186)||(9488717-9488784)
chr1 (119-184)||(8873944-8874009)
chr1 (119-183)||(9318166-9318230)
chr1 (119-191)||(9320064-9320136)
chr1 (119-191)||(9350381-9350453)
[»] chr5 (1 HSPs)
chr5 (149-189)||(40225245-40225285)
[»] chr4 (1 HSPs)
chr4 (114-159)||(27692614-27692659)
[»] chr2 (1 HSPs)
chr2 (149-189)||(7945893-7945933)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 10979574 - 10979469
Alignment:
Q  103 tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10979574 tatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcct 10979475  T
Q  203 acagat 208  Q
    ||||||    
T  10979474 acagat 10979469  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 11007979 - 11007873
Alignment:
Q  102 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcc 201  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11007979 atatgaaaattctacactttgacataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactttgtcc 11007880  T
Q  202 tacagat 208  Q
    |||||||    
T  11007879 tacagat 11007873  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 10974500 - 10974391
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctg 198  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  10974500 gtgatatgaaaattctacactttgatataaagcctcataccatccttcttgatgaatatttcaatccaaaagtttctgattttggacttgctagactttg 10974401  T
Q  199 tcctacagat 208  Q
    ||||||||||    
T  10974400 tcctacagat 10974391  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 11011141 - 11011035
Alignment:
Q  102 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcc 201  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  11011141 atatgaaaattctacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggactagctagactttgtcc 11011042  T
Q  202 tacagat 208  Q
    |||||||    
T  11011041 tacagat 11011035  T

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Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 11033433 - 11033326
Alignment:
Q  101 gatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||    
T  11033433 gatatgaaaattctacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagctagactttgtc 11033334  T
Q  201 ctacagat 208  Q
    ||||||||    
T  11033333 ctacagat 11033326  T

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Target: chr1; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 10914840 - 10914734
Alignment:
Q  102 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | |||    
T  10914840 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggactagccaggctttctcc 10914741  T
Q  202 tacagat 208  Q
    |||||||    
T  10914740 tacagat 10914734  T

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Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 11028466 - 11028570
Alignment:
Q  102 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||    
T  11028466 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaaagtttctgatttcggactagctagactttgtcc 11028565  T
Q  202 tacag 206  Q
    |||||    
T  11028566 tacag 11028570  T

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Target: chr1; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 10903674 - 10903571
Alignment:
Q  105 tgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgctagactctgtcctac 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||    
T  10903674 tgaaaattctacactttgatataaagcctcataacattcttcttgatgaaagtttcaatccaaaagtttctgattttggacttgccagactttctcctac 10903575  T
Q  205 agat 208  Q
    ||||    
T  10903574 agat 10903571  T

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Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 11004881 - 11004963
Alignment:
Q  102 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11004881 atatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 11004963  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 9233915 - 9234005
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| |||||||||| |||||||| ||||||||||| || ||||| || ||| |||||  |||||| ||||| ||||||||||||||    
T  9233915 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgc 9234005  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 9453680 - 9453770
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| ||||| | || |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| |||||||| |||||    
T  9453680 gtgatatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcagattttggtcttgc 9453770  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9399886 - 9399796
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| ||||| | || |||||||| |||||||| |||||||||||||| ||||||||||  || |||||||| || ||||| |||||    
T  9399886 gtgatatgcaaattttgcattttgatattaagcctcacaacatccttcttgacgaaaatttcatccctaaagtttcggactttggtcttgc 9399796  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 8964746 - 8964681
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||| |||||||| ||||||||||||||||| |||||||  |||||||| ||||| ||||||    
T  8964746 tttgatattaagcctcacaacatccttcttgatgagaatttcaccccaaaagtctctgactttgga 8964681  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 8999912 - 8999839
Alignment:
Q  104 atgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctga 177  Q
    ||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| ||||  |||||||| |||||    
T  8999912 atgaagattttacattttgatatcaagcctcacaacatccttcttgatgaaaacttcacaccaaaagtctctga 8999839  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9384479 - 9384389
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| |||||||||| |||||||| ||||||||||| || ||||| || ||| | ||   |||||| ||||| ||||||||||||||    
T  9384479 gtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgc 9384389  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 9432693 - 9432783
Alignment:
Q  99 gtgatatgaaaattctacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    |||||||| ||||| | || |||||||| |||||||| ||||||||||| || ||||||||||  || |||||||| || ||||| |||||    
T  9432693 gtgatatgcaaattttgcattttgatattaagcctcacaacatccttctggacgaaaatttcatccctaaagtttcggactttggtcttgc 9432783  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9464352 - 9464285
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 186  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9464352 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcggatttttgact 9464285  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9488784 - 9488717
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggact 186  Q
    ||||| ||||||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||| ||||    
T  9488784 tttgacataaagcctcataacattcttcttgacgtaaacttcactccaaaggtttcagattttagact 9488717  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 8873944 - 8874009
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgga 184  Q
    |||||||| |||||||| ||||||||||||||||| || || | ||| ||||| ||||| ||||||    
T  8873944 tttgatattaagcctcacaacatccttcttgatgagaactttactccgaaagtctctgactttgga 8874009  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9318166 - 9318230
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttgg 183  Q
    |||||||| ||||| |||||||||||||||||||| || || | ||| |||||||| || |||||    
T  9318166 tttgatatcaagccccataacatccttcttgatgagaactttattcccaaagtttcagactttgg 9318230  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9320136 - 9320064
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgcta 191  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||    
T  9320136 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgcta 9320064  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 9350453 - 9350381
Alignment:
Q  119 tttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggacttgcta 191  Q
    |||||||| ||||| |||||||||||||||||||| || || |  || |||||||| || ||||| |||||||    
T  9350453 tttgatatcaagccccataacatccttcttgatgagaactttatccccaaagtttcagactttggtcttgcta 9350381  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 40225285 - 40225245
Alignment:
Q  149 gatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40225285 gatgaaaatttcaatccaaaactctctgattttggacttgc 40225245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 27692659 - 27692614
Alignment:
Q  114 tacactttgatataaagcctcataacatccttcttgatgaaaattt 159  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||    
T  27692659 tacactttgatataaaacctcataacattcttcttgacgagaattt 27692614  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 7945893 - 7945933
Alignment:
Q  149 gatgaaaatttcaatccaaaagtttctgattttggacttgc 189  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  7945893 gatgaaaatttcaatccaaagctttctgattttggtcttgc 7945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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