View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_16 (Length: 527)
Name: NF0526_low_16
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 98 - 517
Target Start/End: Complemental strand, 53031171 - 53030746
Alignment:
| Q |
98 |
atcgtgtttctttttgtgattaggtactagtggctgattctatgatttggtttatcagcttaatgatatatcacatgatgattgtattttactaatccaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53031171 |
atcgtgtttctttttgtgattaggtactagtggctgattctatgatttggtttatcagcttaatgatatatcacatgatgattgtattttgctaatccaa |
53031072 |
T |
|
| Q |
198 |
caaatcagaattatgtaaatctcagctttaatgtttcaaaaggnnnnnnnncttttcaattcatgtgattgttgctggggacataagggattacagaaaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53031071 |
caaatcagaattatgtaaatctcagctttaatgtttcaaaaggttttttttcttttcaattcatgtgattgttgctggggacataagggattacagaaaa |
53030972 |
T |
|
| Q |
298 |
aattggttttagaaaacacgggtgcaaaaagtaaccccataatttgaagtgactcgaagttgtgcaatacgcaaaaaagagtgcaaaatctta------- |
390 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
53030971 |
aattggttttagaaaacacgggtgcaaaaagcaaccccataatttgaagtgactcgaagttgagcaatacgcaaaaaagagtgcaaaatgttaaaaattt |
53030872 |
T |
|
| Q |
391 |
aaaattgtacttactacattaagatnnnnnnnnnnntgtgcaatacgcaacccttactttgaggatacttctttctgcacgcctttacataagttttcaa |
490 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53030871 |
aaaattgtacttactacattaagat-aaaaaaaaaatgtgcaatacgcaacccttactttgaggatacttctttctgcacgcctttacataagttttcaa |
53030773 |
T |
|
| Q |
491 |
actcagtttatccttttgatattcatc |
517 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
53030772 |
actcggtttatccttttgatattcatc |
53030746 |
T |
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