View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_17 (Length: 506)
Name: NF0526_low_17
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 31 - 495
Target Start/End: Complemental strand, 15185376 - 15184911
Alignment:
| Q |
31 |
ttttagtttttaggtgtgccttgtttgcataaaattactctactaattctcgtcttcttgtccataattaagctaggagattaaagtaatgacattgaca |
130 |
Q |
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| T |
15185376 |
ttttagtttttaggtgtgccttgtttgcataaaattactctactaattctcgtcttcttgtccataattaagctaggcgattaaagtaatgacattgaca |
15185277 |
T |
|
| Q |
131 |
atggataaaatctaatactcaattcttgatggttgaatgcatctaataatatctttttattggcttaactttattaagacttataattgaatcattccaa |
230 |
Q |
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| T |
15185276 |
atggataaaatctaatactcaattcttgatggttgaatgcatctaataatatctttttattggcttaacttttttaagacttataattgaatcattccaa |
15185177 |
T |
|
| Q |
231 |
gcaacatgacaggttacacttcacctcccaataatgaaatctcatttgcctttattttattctttcttaatctaaacttagtgcaaattccactttcttt |
330 |
Q |
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| T |
15185176 |
gcaacatgacaggttacacttcacctcgcaataatgaaatctcatttgcctttattttattctttcttaatctaaacttagtgcaaattccactttcttt |
15185077 |
T |
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| Q |
331 |
attgcagatatttttacctttgatgttgaaatgtagcctaaaacaactaacatcttccaatgacaattgacaaacgatattattaaacctttat-ttttg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15185076 |
attgcagatatttttacctttgatgttgaaatgtagcctaaaacaactaacatcttccaatgacaattgacaaacgatattattaaacctttatttttta |
15184977 |
T |
|
| Q |
430 |
ttgatgaagacattaaaccttgttgaaacaacattagttaattagcaatactaaatattgattcat |
495 |
Q |
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| T |
15184976 |
ttgatgaagacattaaaccttgttgaaacaacattaattaattagcaatactaaatattgattcat |
15184911 |
T |
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