View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_18 (Length: 500)
Name: NF0526_low_18
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 121 - 500
Target Start/End: Complemental strand, 34676806 - 34676424
Alignment:
| Q |
121 |
gaacctgtgaacaatcagattcatccaggatagactaaggtaaactggtattagcatctaaattctaaaggatcttgcacgtatttcgcgtgtat---ac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34676806 |
gaacctgtgaacaatcagattcatccaggatagactaaggtaaactggtattagcatctaaattctaaaggatcttgcacgtatttcgcgtgtatctcac |
34676707 |
T |
|
| Q |
218 |
cgatggttttaaaaaatctcgcaaactaacttgggttacgagtgtagtttagattctatgatatatctgttgtggaagtagggaaacatttccattggca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34676706 |
cgatggttttaaaaaatctcgcaaactaacttgggtaacgagtgtagtttagattctatgatatatctgttgtggaagtagggaaacattttcattggca |
34676607 |
T |
|
| Q |
318 |
aataggtgacttttaagtgcatactcaagtgcttattacctcttgggttttaattgctatcttattaatttcaaccattctagttgttagaaatccgcaa |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34676606 |
aataggtgagttttaagtgcatactcaagtgcttattacctcttgggttgtaattgctatcttattaatttcaaccattctaattgttagaaatccgcaa |
34676507 |
T |
|
| Q |
418 |
actattccgcgtccggtcagaaggtggaaatttagtgttaggaatgcagatatgatcatcaataataggtaaatgattggaaa |
500 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676506 |
actattccatgtccggtcagaaggtggaaatttagtgttaggaatgcagatatgatcatcaataataggtaaatgattggaaa |
34676424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 272 - 439
Target Start/End: Complemental strand, 18144305 - 18144137
Alignment:
| Q |
272 |
tctatgatatatctgttgtggaagtagggaaacatttccattggcaaataggtgacttttaagtgcatactcaagtgcttattacctcttgggttttaat |
371 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||| ||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
18144305 |
tctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaat |
18144206 |
T |
|
| Q |
372 |
tgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc-gcgtccggtcagaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18144205 |
tgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaa |
18144137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 18337293 - 18337372
Alignment:
| Q |
191 |
gatcttgcacgtatttcgcgtgtat---accgatggttttaaaaaatctcgcaaactaacttgggttacgagtgtagttt |
267 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||| |||||||||||| ||||||||| |
|
|
| T |
18337293 |
gatcttgcacgtatttcgcgtgtatctcaccggtggttttaaaaaacctcgcgaactgacttgggttacgggtgtagttt |
18337372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 48185621 - 48185468
Alignment:
| Q |
272 |
tctatgatatatctgttgtggaagtagggaaacatttccattggcaaataggtgacttttaagtgcatactcaagtgcttattacctcttgggttttaat |
371 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||| ||||||||||||| || ||| |||||||| ||||||| |||||||| ||||||||| |||| |
|
|
| T |
48185621 |
tctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacgtcttgggttgtaat |
48185522 |
T |
|
| Q |
372 |
tgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185521 |
tgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc |
48185468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 27608795 - 27608880
Alignment:
| Q |
25 |
aatattggaatcagggaaatatcttatctagagtnnnnnnn-ttaccttcaaataaatgtcaatggctctataaagaccatcatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608795 |
aatattggaatcagggaaatatcttatctagagtaaaaaaaattaccttcaaataaatgtcaatggctctataaagaccatcatca |
27608880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 26842776 - 26842721
Alignment:
| Q |
370 |
attgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc |
425 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
26842776 |
attgctatcttattaatttcaatcattctaattgttagaaatccacaaactattcc |
26842721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 9294013 - 9293947
Alignment:
| Q |
374 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc-gcgtccggtcagaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9294013 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaa |
9293947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 9292379 - 9292295
Alignment:
| Q |
272 |
tctatgatatatctgttgtggaagtagggaaacatttccattggcaaataggtgacttttaagtgcatactcaagtgcttattac |
356 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||||| || ||| |||||||| ||||||| |||||||| |
|
|
| T |
9292379 |
tctatgatatatctgttgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattac |
9292295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 24489470 - 24489404
Alignment:
| Q |
374 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattcc-gcgtccggtcagaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24489470 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaa |
24489404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1245 times since January 2019
Visitors: 3665