View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_19 (Length: 477)
Name: NF0526_low_19
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 47561488 - 47561248
Alignment:
| Q |
29 |
aactttcatcatgtatgatgtatgatttgttaacttaaccttatatgtacggaacctattgataagtatatttgaatttcattctctatgacttggtaag |
128 |
Q |
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| T |
47561488 |
aactttcatcatgtatgatgtatgatttattaacttaaccgtatatgtacggaacctattgataagtatatttgaatttcattctctatgacttggtaag |
47561389 |
T |
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| Q |
129 |
atgatgttgctcaaacacatatacattcaatagtttgagaattagggatgtcaatggggagagacactgatttctcgtctcttcccgttcctacacggtg |
228 |
Q |
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| T |
47561388 |
atgatgttgctcaaacacatatacattcaatagtttgagaattagggatgtcaatagggagagatagtgattgctcgtctcttcccgttcct--acggtg |
47561291 |
T |
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| Q |
229 |
gcggagcattgtatgggctgagatggaccgcggtatacccatc |
271 |
Q |
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| T |
47561290 |
gcggagcattgtatcggctgagatggaccgcggtatacccatc |
47561248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 337 - 440
Target Start/End: Complemental strand, 47561182 - 47561083
Alignment:
| Q |
337 |
acaaaacgactcaccctctccactactcaaacacgatgcttccttccctcatactctactaacgtagtgcttcacgtaattttgttgtcatggctaaggt |
436 |
Q |
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| T |
47561182 |
acaaaacggctcaccctctccactactcaaacacgacgcttccttccctcatactt--ctaacgtaa--cttcacgtaattttgttgtcatggttgaggt |
47561087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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