View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_2 (Length: 874)
Name: NF0526_low_2
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_2 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 751; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 29 - 874
Target Start/End: Complemental strand, 33468252 - 33467401
Alignment:
| Q |
29 |
atctgatatattgtttgggggaaaatttgactcacttttggtgtgatatgtct-agatgacacatacatctttannnnnnnnnn-ggaagacactgatct |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33468252 |
atctgatatattttttgggggaaaatttgactcacttttggtgtgatatgtcttagatgacacatacatctttatttgtttttttggaagacactgatct |
33468153 |
T |
|
| Q |
127 |
tctttcatacacttaccactaatatatatttgcaaaattgaagagtgtgtgtcattttagcatacacacaaaggagagttgagtacaatgtccccaacaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33468152 |
tctttcatacacttaccactaatatatatttgcaaaattgaagagtgtgtgtcattttagcatacacacaaaggagagttgagtacaatgtccccaacaa |
33468053 |
T |
|
| Q |
227 |
ataacagtctggtggttgtttaaatataagggaaggtcgtatattatttgtttgtagctaggtatggtaatggatgagtttcctacatttaaatgagcat |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33468052 |
ataacagtctggtgtttgtttaaatataagggaaggtcgtatattatttgtttgtagctaggtatggtaatggatgagtttcctacatttaaatgagcat |
33467953 |
T |
|
| Q |
327 |
gcaatgttggtgtcaattatatttcattttgttgtcaagtagtctattggatagtattcatcgattaaggtaaatttgtgttggaaagacctttattttt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467952 |
gcaatgttggtgtcaattatatttcattttgttgtcaagtagtctaatggatagtattcat-gattaaggtaaatttgtgttggaaagacctttattttt |
33467854 |
T |
|
| Q |
427 |
tccttaaaatgccaccacttgatagccacattatggcttcctatggtttcttctcttcactctccttcattcatagccaacactctgtgttgagcagtca |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33467853 |
tccttaaaatgccaccacttgatagccacattatggcttcctatggtttcttctcttcactctccttcattcatagccaacactctatgttgagcagtca |
33467754 |
T |
|
| Q |
527 |
agctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaacatttcacaagactcttgta |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33467753 |
agctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttataacatttcacaagactcttgta |
33467654 |
T |
|
| Q |
627 |
tat-----gataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaagcacacgaaaaatctataggatggatttaccttccgca |
721 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467653 |
tatgataagataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaagcacacgaaaaatctataggatggatttaccttccgca |
33467554 |
T |
|
| Q |
722 |
tttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccctcactaataacattaaag |
821 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467553 |
tttattactccaaagccacaccccctttgtgtaagccctcaaaaccactcgcaacactcccagcatgtccatttaaatcccctcactaataacattaaag |
33467454 |
T |
|
| Q |
822 |
gtgtcttctccataacaacatcaatcccctcgatctaactttatccgtgcacc |
874 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33467453 |
gtgtcttctccataacaacatcaatcccctcgatctaactttatccgtgcacc |
33467401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 507 - 804
Target Start/End: Complemental strand, 6080560 - 6080267
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaa |
606 |
Q |
| |
|
|||||| ||||| | ||| |||||||||| || ||||||||||| ||||||||||| || |||| ||||||||||| ||| |||||||| | |||| |
|
|
| T |
6080560 |
cactctatgttgggtagttaagctctctccaggtatgactttacagtccaaacaaatcttcctgtcggatttcctaataagaaataaatctatttgagaa |
6080461 |
T |
|
| Q |
607 |
catttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggat |
705 |
Q |
| |
|
||| || ||||||||| |||||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||| | |||||||| || ||| |
|
|
| T |
6080460 |
catgagacctcactcttgtaagtgataagatgctcctctcttttcccgaaacaagtattagctatagtaagatcaaaagccgatgaaaaatc--taagat |
6080363 |
T |
|
| Q |
706 |
ggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccct |
804 |
Q |
| |
|
||||||||| ||| |||| || | || | ||| ||||| | || || ||||||||||| |||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
6080362 |
ggatttaccctccacattaatctccccgataccatacccc---catgcaaaccctcaaaacctctcgaaacactccgtacatgcccatttaaatcccct |
6080267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 34604338 - 34604384
Alignment:
| Q |
268 |
tattatttgtttgtagctaggtatggtaatggatgagtttcctacat |
314 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
34604338 |
tattattcgtttgtagctaggtatgataatagatgagtttcctacat |
34604384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 34725615 - 34725661
Alignment:
| Q |
268 |
tattatttgtttgtagctaggtatggtaatggatgagtttcctacat |
314 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
34725615 |
tattattcgtttgtagctaggtatgataatagatgagtttcctacat |
34725661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 683
Target Start/End: Original strand, 20429808 - 20429983
Alignment:
| Q |
508 |
actctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaac |
607 |
Q |
| |
|
||||| ||||| | ||| ||| |||||| || ||||||||||| || ||||| || || |||||| |||||||||| ||||||||| ||| ||||| |
|
|
| T |
20429808 |
actctatgttgggtagttaagatctctccaggtatgactttacagtctaaacagatcttcctgtctgttttcctaatgagaaagaaatccatccgagaac |
20429907 |
T |
|
| Q |
608 |
atttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaa |
683 |
Q |
| |
|
|| | |||||| || |||| ||||| ||||||||||||| |||||| |||||| ||| |||||||||||| |
|
|
| T |
20429908 |
atgaggccccactcttataagtgatgagatggtcctctcttttcctaaagcacgtattaactatagtaagatcaaa |
20429983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 51449874 - 51450169
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaa |
606 |
Q |
| |
|
|||||| ||||| | ||| |||||||||| || ||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
51449874 |
cactctatgttgggtagttaagctctctccaggtatgactttacagtccaaacaaatcttcctgtcggatttcctaataagaaagaaatctatctgagaa |
51449973 |
T |
|
| Q |
607 |
catttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggat |
705 |
Q |
| |
|
||| || ||||||||| |||||||||| |||||| |||||| || ||||||||||||| ||||||||| ||||| | |||||||| || ||| |
|
|
| T |
51449974 |
catgagaccccactcttgtaagtgataagatgctcctctattttcctgaaacaagtattagctatagtaagatcaaaagccgatgaaaaatc--taagat |
51450071 |
T |
|
| Q |
706 |
ggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccctc |
805 |
Q |
| |
|
||||||||| |||||||| || | || | ||| |||||| | || || ||||| ||||| |||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
51450072 |
ggatttaccctccgcattaatctccccgagaccataccccc--catgcaaaccctcgaaacctctcgaaacactccctacatgcccatttaaatcccctc |
51450169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 507 - 805
Target Start/End: Complemental strand, 52137302 - 52137007
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaa |
606 |
Q |
| |
|
|||||| ||||| | ||| |||||||||| || |||| |||||| ||||||||||| || |||| ||||||||||| ||||||||||| || |||| |
|
|
| T |
52137302 |
cactctatgttgggtagttaagctctctccaggtatgtctttacagtccaaacaaatcttcctgtcggatttcctaataagaaagaaatctacctgagaa |
52137203 |
T |
|
| Q |
607 |
catttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggat |
705 |
Q |
| |
|
||| || ||||||| | ||||| |||| ||||||||||||| || ||||||||||||| ||||||||| |||| | |||||||| || ||| |
|
|
| T |
52137202 |
catgagaccccactcttgaaagtgataggatgctcctctcttttcctgaaacaagtattagctatagtaagatcaaaagtcgatgaaaaatc--taagat |
52137105 |
T |
|
| Q |
706 |
ggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccctc |
805 |
Q |
| |
|
||||||||| |||||||| || | || | ||| |||||| | || || ||||||||||| || | ||||||||| ||||| |||||||||||||||| |
|
|
| T |
52137104 |
ggatttaccctccgcattaatctccccgagaccataccccc--catgcaaaccctcaaaacctcttgaaacactccctacatgcccatttaaatcccctc |
52137007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 53871374 - 53871218
Alignment:
| Q |
149 |
tatatatttgcaaaattgaagagtgtgtgtcattttagcatacacacaaaggagagttgagtacaatgtccccaacaaataacagtctggtggttgttta |
248 |
Q |
| |
|
||||| ||| |||||| ||| |||||||||||||||||||| ||| ||||||| ||||||||||| || ||||||||||| |||||||| ||||||| |
|
|
| T |
53871374 |
tatatttttacaaaatagaaaagtgtgtgtcattttagcat---caccaaggagatttgagtacaatttctccaacaaataagggtctggtgtttgttta |
53871278 |
T |
|
| Q |
249 |
aatataagggaaggtcgtatattatttgtttgtagcta----ggtatggtaatggatgagtt |
306 |
Q |
| |
|
| |||||| ||||| |||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
53871277 |
a--ataaggaaaggttgtatattattcgtttgtaggtatgctggtatggtaatggatgagtt |
53871218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 507 - 805
Target Start/End: Original strand, 48624697 - 48624994
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctct--agatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttag |
604 |
Q |
| |
|
|||||| ||||| | ||| ||||||||||| || |||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| || |
|
|
| T |
48624697 |
cactctatgttgggtagttaagctctctctccaggtatgactttacggtccaaacaaatcttcctgtcagatttcctaataagaaagaaatctatctgag |
48624796 |
T |
|
| Q |
605 |
aacatttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaagcac-acgaaaaatctatagg |
703 |
Q |
| |
|
||||| || ||||||||| |||| ||||| ||||||||||||| || ||||||||||||| |||||||||||| | | | |||||||| || | |
|
|
| T |
48624797 |
aacatgagaccccactcttgtaagtgattagatgctcctctcttttcctgaaacaagtattagctatagtaagatcaaaacccaatgaaaaatc--taag |
48624894 |
T |
|
| Q |
704 |
atggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccc |
803 |
Q |
| |
|
||||||||||| || ||||| || | || | ||| |||||| | || || ||||| ||||| |||| ||||||||| | ||| |||||||||||||| |
|
|
| T |
48624895 |
atggatttaccctctgcattaatctccccgagaccataccccc--catgcaaaccctcgaaacctctcgaaacactccctaaatgcccatttaaatcccc |
48624992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 540 - 726
Target Start/End: Complemental strand, 26064 - 25879
Alignment:
| Q |
540 |
tatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaacatttcacaagactcttgtatatgataagatgt |
639 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||| |||||||| ||| |||||||||| ||||||| | | ||||||||| |||||||||| |
|
|
| T |
26064 |
tatgactttacggtccaaacaaatctttatgtatgaattcctaataagaaaaaaatctatctgagaacatattatcgcactcttgtaagtgataagatgc |
25965 |
T |
|
| Q |
640 |
tcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggatggatttaccttccgcatttat |
726 |
Q |
| |
|
|||||||| |||||||| || |||||||||| | ||||||| ||||| || ||||||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
25964 |
tcctctctgttccaaaaacacgtattagctataataagatcaaaagccgacaaaaaatc--taggatgaatttaccctccacatttat |
25879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 502 - 805
Target Start/End: Original strand, 1289693 - 1289995
Alignment:
| Q |
502 |
gccaacactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctat-- |
599 |
Q |
| |
|
|||| |||||| ||||| | ||| |||||||||| || ||||||||||| || |||||||| || |||| ||||||||||| |||||||| ||| |
|
|
| T |
1289693 |
gccatcactctatgttgggtagttaagctctctccaggtatgactttacagtctaaacaaatcttcctgtcggatttcctaataagaaagaaatatatat |
1289792 |
T |
|
| Q |
600 |
cttagaacatttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatct |
698 |
Q |
| |
|
|| ||||||| || ||||||||| |||||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||| | | |||||| |
|
|
| T |
1289793 |
ctgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagctatagtaagatcaaaagccgatgtaaaatc- |
1289891 |
T |
|
| Q |
699 |
ataggatggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaa |
798 |
Q |
| |
|
|| |||||||||||| |||| ||| || | || | ||| |||||| | || || ||||||||||| |||| ||||||||| ||||| ||||||||| |
|
|
| T |
1289892 |
-taagatggatttaccctccgtattaatctccccgagaccataccccc--catgcaaaccctcaaaacctctcgaaacactccctacatgcccatttaaa |
1289988 |
T |
|
| Q |
799 |
tcccctc |
805 |
Q |
| |
|
||||||| |
|
|
| T |
1289989 |
tcccctc |
1289995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 507 - 670
Target Start/End: Complemental strand, 16291718 - 16291555
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaa |
606 |
Q |
| |
|
|||||| ||||| ||||| |||||||| | || ||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||| | |||| |
|
|
| T |
16291718 |
cactctatgttgggcagttaagctctccccaggtatgactttacagtccaaacaaatattcctgtcagatttcctaataagaaagaaatctatttgagaa |
16291619 |
T |
|
| Q |
607 |
catttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagcta |
670 |
Q |
| |
|
|||| || ||||||||| |||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
16291618 |
cattagaccccactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagcta |
16291555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 507 - 805
Target Start/End: Complemental strand, 8178904 - 8178610
Alignment:
| Q |
507 |
cactctgtgttgagcagtcaagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaa |
606 |
Q |
| |
|
|||||| ||||| | ||| || ||||||| || ||||||||||| ||||||||||| || |||| | ||||||||| |||||||||||||| |||| |
|
|
| T |
8178904 |
cactctatgttgggtagttaaactctctccaggtatgactttacagtccaaacaaatcttcctgtcggctttcctaataagaaagaaatctatctgagaa |
8178805 |
T |
|
| Q |
607 |
catttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggat |
705 |
Q |
| |
|
||| || ||||||||| |||||| ||| |||||| |||||| || ||||||||||||| ||||||||| ||||| | |||||||| || ||| |
|
|
| T |
8178804 |
catgagaccccactcttgtaagtgataaaatgctcctctattttcctgaaacaagtattagctatagtaagatcaaaagctgatgaaaaatc--taagat |
8178707 |
T |
|
| Q |
706 |
ggatttaccttccgcatttattactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccctc |
805 |
Q |
| |
|
||||||||| |||||||| || | || | ||| ||||| | || || ||||| ||||| |||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
8178706 |
ggatttaccctccgcattaatctccccgagaccatacccc---catgcaaaccctcgaaacctctcgaaacactccctacatgcccatttaaatcccctc |
8178610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 526 - 699
Target Start/End: Original strand, 28217988 - 28218161
Alignment:
| Q |
526 |
aagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaacatttcacaagactcttgt |
625 |
Q |
| |
|
|||||||||| || ||||||||||| |||||| |||| || || |||||||||||| |||||||||||||| |||| | |||| | ||||| |
|
|
| T |
28217988 |
aagctctctccaggtatgactttacagtccaaaaaaatcttctcgtttgatttcctaataagaaagaaatctatctgagaataagtcaccccattcttgc |
28218087 |
T |
|
| Q |
626 |
atatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaagcacacgaaaaatcta |
699 |
Q |
| |
|
|| ||||||||||||| |||||||||| ||| || |||||| || |||| ||||||| | |||||||||||| |
|
|
| T |
28218088 |
atgtgataagatgttcatctcttttcctaaaacatgtattaattatagtaggatcaaaacgaacgaaaaatcta |
28218161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 683
Target Start/End: Original strand, 45328898 - 45328963
Alignment:
| Q |
618 |
actcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaa |
683 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||| ||| || |||||||| | |||||||||||| |
|
|
| T |
45328898 |
actcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagcgatagtaagatcaaa |
45328963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 526 - 805
Target Start/End: Original strand, 49349601 - 49349877
Alignment:
| Q |
526 |
aagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaacatttcacaagactcttgt |
625 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||| || || | ||||||||||| |||||||||||||| ||||||| || |||||||| |
|
|
| T |
49349601 |
aagctctctccaggtatgactttacagtccaaacaaatcttcctgacggatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgt |
49349700 |
T |
|
| Q |
626 |
atatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatctataggatggatttaccttccgcattt |
724 |
Q |
| |
|
| |||||||||| || ||| |||||| || ||||||||||||| ||||||||| ||||| | |||||||| || |||||||||||| |||||||| |
|
|
| T |
49349701 |
aagtgataagatgctcatctattttcctgaaacaagtattagctatagtaagatcaaaagccgatgaaaaatc--taagatggatttaccctccgcatta |
49349798 |
T |
|
| Q |
725 |
attactccaaagccacacccccttcgtgtaagccctcaaaaccactcgcaacactcccaacatgtccatttaaatcccctc |
805 |
Q |
| |
|
|| | || | ||| | |||| | || || ||||| ||||| |||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
49349799 |
atctccccgagaccatatcccc--catgcaaaccctcgaaacctctcgaaacactccctacatgcccatttaaatcccctc |
49349877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 666
Target Start/End: Original strand, 45878074 - 45878215
Alignment:
| Q |
525 |
caagctctctctagatatgactttacgatccaaacaaatttttatgtctgatttcctaatgttaaagaaatctatcttagaacatttcacaagactcttg |
624 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| ||| || |||||||||||| | || ||||||||| ||| ||| |||| ||||||| |
|
|
| T |
45878074 |
caagctctctcctggtatgactttagagtccaaacaaatctttcagtttgatttcctaataagagagcaatctatctgagagcatgtcacctcactcttg |
45878173 |
T |
|
| Q |
625 |
tatatgataagatgttcctctcttttccaaaagcaagtatta |
666 |
Q |
| |
|
||| |||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
45878174 |
tatgtgataaaatgttcctcccttttcctaaagcaagtatta |
45878215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 699
Target Start/End: Complemental strand, 33251130 - 33251033
Alignment:
| Q |
603 |
agaacatttcacaagactcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatc-aaagcacacgaaaaatcta |
699 |
Q |
| |
|
||||||| |||| | |||||| ||| ||||||||| |||||||||||| | || || |||||||||| |||| |||| |||||| |||||||||||| |
|
|
| T |
33251130 |
agaacatatcaccacactcttctatgtgataagatcttcctctctttttctgaatcatgtattagctatagtatgatcaaaagcagacgaaaaatcta |
33251033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 683
Target Start/End: Original strand, 15217519 - 15217584
Alignment:
| Q |
618 |
actcttgtatatgataagatgttcctctcttttccaaaagcaagtattagctaaagtaagatcaaa |
683 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||| ||| || |||||||||| |||||||||||| |
|
|
| T |
15217519 |
actcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagctatagtaagatcaaa |
15217584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 186 times since January 2019
Visitors: 3648